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The map label for this gene is rpl40e

Identifier: 20094079

GI number: 20094079

Start: 601207

End: 601356

Strand: Direct

Name: rpl40e

Synonym: MK0641

Alternate gene names: 20094079

Gene position: 601207-601356 (Clockwise)

Preceding gene: 20094076

Following gene: 20094080

Centisome position: 35.47

GC content: 60.0

Gene sequence:

>150_bases
ATGGCGAAGTTTCCGGAGGCGGAGGCCCGGATCTTCAACAAACTGATCTGCATGAAGTGTAACGCGAGGAACCCACCGGA
CGCCACGAAGTGCAGGAAGTGCGGGTACAAGGGACTACGACCCAAGGCCAGGGAGCCGAGAGGCGGTTAG

Upstream 100 bases:

>100_bases
CCTAAATACGGGATTATGCGTTTCGGAAACGTCGGAGGCCGAAAAGTCACCGGCGTCACTAAATTAGCTGACTAGCCGAG
GAGTGCAGGGGGGTGTTCGG

Downstream 100 bases:

>100_bases
ACCATGGGCGTGTTCGGGTACTTGCGGGAGCGCACCCCCTGTCATCTCACCCTGCTCGACCCCGTGGACGTGGGTCCGGA
GGAGGTCCCGGAGGTCCTGG

Product: 50S ribosomal protein L40e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 49; Mature: 48

Protein sequence:

>49_residues
MAKFPEAEARIFNKLICMKCNARNPPDATKCRKCGYKGLRPKAREPRGG

Sequences:

>Translated_49_residues
MAKFPEAEARIFNKLICMKCNARNPPDATKCRKCGYKGLRPKAREPRGG
>Mature_48_residues
AKFPEAEARIFNKLICMKCNARNPPDATKCRKCGYKGLRPKAREPRGG

Specific function: Unknown

COG id: COG1552

COG function: function code J; Ribosomal protein L40E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L40e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL40_METKA (Q8TXM1)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_613926.1
- ProteinModelPortal:   Q8TXM1
- SMR:   Q8TXM1
- GeneID:   1476742
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK0641
- NMPDR:   fig|190192.1.peg.639
- HOGENOM:   HBG391745
- ProtClustDB:   PRK04136
- BioCyc:   MKAN190192:MK0641-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00788
- InterPro:   IPR001975
- InterPro:   IPR001876
- SMART:   SM00547

Pfam domain/function: PF01020 Ribosomal_L40e

EC number: NA

Molecular weight: Translated: 5524; Mature: 5392

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
12.2 %Cys+Met (Translated Protein)
8.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
10.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKFPEAEARIFNKLICMKCNARNPPDATKCRKCGYKGLRPKAREPRGG
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKFPEAEARIFNKLICMKCNARNPPDATKCRKCGYKGLRPKAREPRGG
CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014