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The map label for this gene is NIP7

Identifier: 20094046

GI number: 20094046

Start: 567068

End: 567601

Strand: Direct

Name: NIP7

Synonym: MK0608

Alternate gene names: NA

Gene position: 567068-567601 (Clockwise)

Preceding gene: 20094044

Following gene: 20094047

Centisome position: 33.46

GC content: 61.05

Gene sequence:

>534_bases
TTGAAACCGGAGCTCAAGCGCGTCCCCCGCGAAGAGCTCGAGTCGATCGCGAACGAGATGGCTAGGAAGTTCAACTGCGA
ACGTGTAGCCTCCGTCGTGAGATCTTTCCACCTCATCAAGCTCGAGGGTAGGTGGACAGAGTACTTCGTCGTGAACCGGG
TTGATTTCGACCCGGCCGATTTGCCCGAGCGCGCGGATCCGTTCTTAGTCGGTCGACCCTTCTGCGAGAGGTCGGCCCGG
GGCGACCTCCGAATTCACGTCGAAGGTGCGCGCGAACTCGCGCGCCGCGTCGATGAAATAAAGACTTACGTGACGGAACG
GGCGGCGGTGCTGTTCACCTACGGTCGAGACGTGCTCCCCGAGAGTATCGTCGAAATCCGGGGTCCGAAGGAGCCCAGAC
TGGTCGCGGTGGTGTATCGTGACGATCTGGGGGAGCATTGCGTCGGGGTGGGTCGCCTTCGGTTCTCCGAAGATGGTCGT
CCCGTGGTGGATAACGTGATCGATCGTGGCTGGTATCTCCGGAGGGGAGGTTGA

Upstream 100 bases:

>100_bases
CCCTGCTTTGACTCGTGGTCCCTCGGTGGGACACGCCTCCACGATGAGTTCGATCAGTTCTTCCTCCTCCTTCGGCCGCC
ACGTCCGGGGTGACGGTCTC

Downstream 100 bases:

>100_bases
GATGCTGGCCATCAGCATGGACGTGGAGAACGTTCCGGGTGCTCTTAAAGCGATCGCCGGCGTCATCGCGGACCACGGCG
GCAACATAGTCCACATCCAG

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MKPELKRVPREELESIANEMARKFNCERVASVVRSFHLIKLEGRWTEYFVVNRVDFDPADLPERADPFLVGRPFCERSAR
GDLRIHVEGARELARRVDEIKTYVTERAAVLFTYGRDVLPESIVEIRGPKEPRLVAVVYRDDLGEHCVGVGRLRFSEDGR
PVVDNVIDRGWYLRRGG

Sequences:

>Translated_177_residues
MKPELKRVPREELESIANEMARKFNCERVASVVRSFHLIKLEGRWTEYFVVNRVDFDPADLPERADPFLVGRPFCERSAR
GDLRIHVEGARELARRVDEIKTYVTERAAVLFTYGRDVLPESIVEIRGPKEPRLVAVVYRDDLGEHCVGVGRLRFSEDGR
PVVDNVIDRGWYLRRGG
>Mature_177_residues
MKPELKRVPREELESIANEMARKFNCERVASVVRSFHLIKLEGRWTEYFVVNRVDFDPADLPERADPFLVGRPFCERSAR
GDLRIHVEGARELARRVDEIKTYVTERAAVLFTYGRDVLPESIVEIRGPKEPRLVAVVYRDDLGEHCVGVGRLRFSEDGR
PVVDNVIDRGWYLRRGG

Specific function: Unknown

COG id: COG1374

COG function: function code J; Protein involved in ribosomal biogenesis, contains PUA domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0113 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005155 [H]

Pfam domain/function: PF03657 UPF0113 [H]

EC number: NA

Molecular weight: Translated: 20467; Mature: 20467

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPELKRVPREELESIANEMARKFNCERVASVVRSFHLIKLEGRWTEYFVVNRVDFDPAD
CCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEECCEEEEEEEEECCCCCCC
LPERADPFLVGRPFCERSARGDLRIHVEGARELARRVDEIKTYVTERAAVLFTYGRDVLP
CCCCCCCEEEECHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHH
ESIVEIRGPKEPRLVAVVYRDDLGEHCVGVGRLRFSEDGRPVVDNVIDRGWYLRRGG
HHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCEEECCCCCHHHHHHHHCCEEEECCC
>Mature Secondary Structure
MKPELKRVPREELESIANEMARKFNCERVASVVRSFHLIKLEGRWTEYFVVNRVDFDPAD
CCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEECCEEEEEEEEECCCCCCC
LPERADPFLVGRPFCERSARGDLRIHVEGARELARRVDEIKTYVTERAAVLFTYGRDVLP
CCCCCCCEEEECHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHH
ESIVEIRGPKEPRLVAVVYRDDLGEHCVGVGRLRFSEDGRPVVDNVIDRGWYLRRGG
HHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCEEECCCCCHHHHHHHHCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]