Click here to switch to the map view.

The map label for this gene is 20094042

Identifier: 20094042

GI number: 20094042

Start: 561299

End: 562033

Strand: Direct

Name: 20094042

Synonym: MK0604

Alternate gene names: NA

Gene position: 561299-562033 (Clockwise)

Preceding gene: 20094041

Following gene: 20094044

Centisome position: 33.12

GC content: 68.03

Gene sequence:

>735_bases
ATGTCGGGCCACACGGGACCCGAGCTGGCGCCCGAGCTGGAGCGCCACGGCGTAGGGATGGTGATACTCGGCGGTTACCC
CGGCGACGACGCCACTTACCGGGCCTCGAAGCTGGTGGCACGCCGACGGGACGAGTTCGCGGTGCCGCCCGACCGCTTAC
CGGAGGAGCTGTCACGCGTCGACGTGGAGATACCGGTGGCCGTGAACGTGAGGTTCGCGGACCCCCGTGAGGCCGGGGAA
CTCTCCGGTGAACTGGCGGACCTCGTGGACGTCGTCGAGATCAACGCCCACTGTCGACAACCCGAGATCGTCCGAGCCGG
CGCGGGCGAGGCGCTGCTCGAGGACCGGACACGGCTGATCGAGATCGTCGAAGCCGTGGCGGAGCACGACGTGTACGTCT
CCGTGAAGCTCCGCGGACCGCACCCCGCGTTCGAAGACGCGCTGGAAGCCCTGCGGGACTCGTCGGTGGACGTCCTACAC
GTGGACGCCATGAAACCTGGCGAACCGACGTACGAGCTGGAGTACGTCCGGGCGGCGGCTCGGGTCGGGGTTCCGGTTAT
CGGGAACAACTCGGTCCGCACGCCCGAGGACGTCGACCGCATGTTCGAGGCCGGTGCATCCGCGGTGTCCGTGGGTCGAC
CGATCCTCGAGGGAGACTGGGACGTCCTCGAACGGCTCGTCCGGTACACCGTACTGAGGAAAAGTAGCGAAGGGGCAGGA
CTTGCCCGCACGTGA

Upstream 100 bases:

>100_bases
TGACAAGAGGGTTAGCCGAACCGTGACGAGCGTTTGCCGGTCCGAGGCCCTCAGGTTCTGGAAACGACTGGGCTGTACCT
CGCTCACGTTCAACGCCCCG

Downstream 100 bases:

>100_bases
GGACCGGCCGTTGGCCCCGGCTCATAAGAGCCACCGATTCAGGGCACTGTCCGACCGGTCTCAGGGTGGCGGTGCACCCG
ATTACCCCCTACCTCTCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSGHTGPELAPELERHGVGMVILGGYPGDDATYRASKLVARRRDEFAVPPDRLPEELSRVDVEIPVAVNVRFADPREAGE
LSGELADLVDVVEINAHCRQPEIVRAGAGEALLEDRTRLIEIVEAVAEHDVYVSVKLRGPHPAFEDALEALRDSSVDVLH
VDAMKPGEPTYELEYVRAAARVGVPVIGNNSVRTPEDVDRMFEAGASAVSVGRPILEGDWDVLERLVRYTVLRKSSEGAG
LART

Sequences:

>Translated_244_residues
MSGHTGPELAPELERHGVGMVILGGYPGDDATYRASKLVARRRDEFAVPPDRLPEELSRVDVEIPVAVNVRFADPREAGE
LSGELADLVDVVEINAHCRQPEIVRAGAGEALLEDRTRLIEIVEAVAEHDVYVSVKLRGPHPAFEDALEALRDSSVDVLH
VDAMKPGEPTYELEYVRAAARVGVPVIGNNSVRTPEDVDRMFEAGASAVSVGRPILEGDWDVLERLVRYTVLRKSSEGAG
LART
>Mature_243_residues
SGHTGPELAPELERHGVGMVILGGYPGDDATYRASKLVARRRDEFAVPPDRLPEELSRVDVEIPVAVNVRFADPREAGEL
SGELADLVDVVEINAHCRQPEIVRAGAGEALLEDRTRLIEIVEAVAEHDVYVSVKLRGPHPAFEDALEALRDSSVDVLHV
DAMKPGEPTYELEYVRAAARVGVPVIGNNSVRTPEDVDRMFEAGASAVSVGRPILEGDWDVLERLVRYTVLRKSSEGAGL
ART

Specific function: Unknown

COG id: COG0042

COG function: function code J; tRNA-dihydrouridine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005270
- InterPro:   IPR001269 [H]

Pfam domain/function: PF01207 Dus [H]

EC number: NA

Molecular weight: Translated: 26560; Mature: 26429

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHTGPELAPELERHGVGMVILGGYPGDDATYRASKLVARRRDEFAVPPDRLPEELSRV
CCCCCCCCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
DVEIPVAVNVRFADPREAGELSGELADLVDVVEINAHCRQPEIVRAGAGEALLEDRTRLI
CEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHH
EIVEAVAEHDVYVSVKLRGPHPAFEDALEALRDSSVDVLHVDAMKPGEPTYELEYVRAAA
HHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH
RVGVPVIGNNSVRTPEDVDRMFEAGASAVSVGRPILEGDWDVLERLVRYTVLRKSSEGAG
HCCCEEECCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
LART
CCCC
>Mature Secondary Structure 
SGHTGPELAPELERHGVGMVILGGYPGDDATYRASKLVARRRDEFAVPPDRLPEELSRV
CCCCCCCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
DVEIPVAVNVRFADPREAGELSGELADLVDVVEINAHCRQPEIVRAGAGEALLEDRTRLI
CEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHH
EIVEAVAEHDVYVSVKLRGPHPAFEDALEALRDSSVDVLHVDAMKPGEPTYELEYVRAAA
HHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH
RVGVPVIGNNSVRTPEDVDRMFEAGASAVSVGRPILEGDWDVLERLVRYTVLRKSSEGAG
HCCCEEECCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
LART
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]