Click here to switch to the map view.

The map label for this gene is yafC [C]

Identifier: 20094012

GI number: 20094012

Start: 535060

End: 535818

Strand: Direct

Name: yafC [C]

Synonym: MK0574

Alternate gene names: 20094012

Gene position: 535060-535818 (Clockwise)

Preceding gene: 20094009

Following gene: 20094014

Centisome position: 31.57

GC content: 59.68

Gene sequence:

>759_bases
GTGAGGTTAGACGTCGACGTGGCGATCAGGGTGAACGGAGTACTCCTAACCCCCGAGGAGCTCGAGTTGCTGCTCAAGTT
GTCGGAACACGGATCGATGTCCAAAGTGGCGGAGGAGAAGGGTGTGACACGGTCCGCGGTACACAAACGGATCAGGAATC
TCGAGGAACGTCTCGGGTGCCGACTGGTTGAGTCGAGTCCTCTCGGATCCTATCTCACGGAGCACGGACGCAGGATAGTG
ATCAAGTACGTGAACGCCAAGGCTAGACTCTCAAGAACGGAAACCACGGTAGCGTGTTCTGAGACCGTAATAGAAGACGT
CCTAGCCGCTCTAGGTAGAGAACACGATGTCGACGTTATCGTGCCGCCTCACGAGAAAATGAGACGTGTGGAGGCGGACG
TGGTGGTCCCAGACGATCCCGTGATAGTCTTCGACCGCTCCGATGAGGCCGTCGGCGAACCGGTCGTCGTCAGGCGAACG
CGGCTGGTACGGGTCGGTGACGGAAGTGGGTTCGTCGAGGTGCCCGGGAGCGCGCAGCGGATATACCTCACAGATCTCCG
CAACAGGGAGGAGATAAGGCCGAAAATGCGCGTAAGCTATTACGCCTCGGCCCTCGAGGCTGTTCGGGACGGAGGAATGT
GGACCGTGGTACCCGAGGAGCTGGCCCCCGAGGGTGACGATCCCGGTCCTCACTACACCGTGATGGCGTTACCACTCACC
CGAGACGGGGAGGACCTCCTCGATGTTCTGGAAGGCTAG

Upstream 100 bases:

>100_bases
CGCGCGGCCCTGAAGGGTTCCGCCCAGAAGAACCTTTTTACGATACCCACCCGGCACCGCGTGTAGGTACGCTCAACGTC
AACCTGCGGGGAACGGCTCC

Downstream 100 bases:

>100_bases
CCTCGTAGGTCTCGTGACATTGTGCGCGGTTTTGGCGGCCGCAGGATGTCAGGAAATGAGAGCGCCGCCGATCGATCAGC
CGCAAGGGCCGCCGAAGGTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MRLDVDVAIRVNGVLLTPEELELLLKLSEHGSMSKVAEEKGVTRSAVHKRIRNLEERLGCRLVESSPLGSYLTEHGRRIV
IKYVNAKARLSRTETTVACSETVIEDVLAALGREHDVDVIVPPHEKMRRVEADVVVPDDPVIVFDRSDEAVGEPVVVRRT
RLVRVGDGSGFVEVPGSAQRIYLTDLRNREEIRPKMRVSYYASALEAVRDGGMWTVVPEELAPEGDDPGPHYTVMALPLT
RDGEDLLDVLEG

Sequences:

>Translated_252_residues
MRLDVDVAIRVNGVLLTPEELELLLKLSEHGSMSKVAEEKGVTRSAVHKRIRNLEERLGCRLVESSPLGSYLTEHGRRIV
IKYVNAKARLSRTETTVACSETVIEDVLAALGREHDVDVIVPPHEKMRRVEADVVVPDDPVIVFDRSDEAVGEPVVVRRT
RLVRVGDGSGFVEVPGSAQRIYLTDLRNREEIRPKMRVSYYASALEAVRDGGMWTVVPEELAPEGDDPGPHYTVMALPLT
RDGEDLLDVLEG
>Mature_252_residues
MRLDVDVAIRVNGVLLTPEELELLLKLSEHGSMSKVAEEKGVTRSAVHKRIRNLEERLGCRLVESSPLGSYLTEHGRRIV
IKYVNAKARLSRTETTVACSETVIEDVLAALGREHDVDVIVPPHEKMRRVEADVVVPDDPVIVFDRSDEAVGEPVVVRRT
RLVRVGDGSGFVEVPGSAQRIYLTDLRNREEIRPKMRVSYYASALEAVRDGGMWTVVPEELAPEGDDPGPHYTVMALPLT
RDGEDLLDVLEG

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28008; Mature: 28008

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDVDVAIRVNGVLLTPEELELLLKLSEHGSMSKVAEEKGVTRSAVHKRIRNLEERLGC
CEEEEEEEEEEEEEEECHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCE
RLVESSPLGSYLTEHGRRIVIKYVNAKARLSRTETTVACSETVIEDVLAALGREHDVDVI
EEECCCCCHHHHHHCCCEEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
VPPHEKMRRVEADVVVPDDPVIVFDRSDEAVGEPVVVRRTRLVRVGDGSGFVEVPGSAQR
ECCHHHHHHHHCCEECCCCCEEEEECCCCHHCCCEEEEEEEEEEECCCCCEEECCCCCCE
IYLTDLRNREEIRPKMRVSYYASALEAVRDGGMWTVVPEELAPEGDDPGPHYTVMALPLT
EEEECCCCHHHHCHHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCEEEEEEEEC
RDGEDLLDVLEG
CCCHHHHHHHCC
>Mature Secondary Structure
MRLDVDVAIRVNGVLLTPEELELLLKLSEHGSMSKVAEEKGVTRSAVHKRIRNLEERLGC
CEEEEEEEEEEEEEEECHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCE
RLVESSPLGSYLTEHGRRIVIKYVNAKARLSRTETTVACSETVIEDVLAALGREHDVDVI
EEECCCCCHHHHHHCCCEEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
VPPHEKMRRVEADVVVPDDPVIVFDRSDEAVGEPVVVRRTRLVRVGDGSGFVEVPGSAQR
ECCHHHHHHHHCCEECCCCCEEEEECCCCHHCCCEEEEEEEEEEECCCCCEEECCCCCCE
IYLTDLRNREEIRPKMRVSYYASALEAVRDGGMWTVVPEELAPEGDDPGPHYTVMALPLT
EEEECCCCHHHHCHHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCEEEEEEEEC
RDGEDLLDVLEG
CCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA