| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yjbB [H]
Identifier: 18311350
GI number: 18311350
Start: 2729994
End: 2731607
Strand: Reverse
Name: yjbB [H]
Synonym: CPE2368
Alternate gene names: 18311350
Gene position: 2731607-2729994 (Counterclockwise)
Preceding gene: 18311351
Following gene: 18311349
Centisome position: 90.11
GC content: 30.67
Gene sequence:
>1614_bases TTGAAAGATGCAATTTTTACCTTAATGGAAGTTGCCGGTGGATTAGGTCTATTCCTTTTTGGAATGAAGTTAATGGGAGA AGGATTAGAGAATGCTGCAGGTGATAAATTAAAAAGTATATTAGAGAAAGTTACTAAAAATCCAATATCAGCAGTTTTAG TTGGTGCCTTTGTTACAATGGTAATACAAAGTTCAAGTGCTACTACAGTAATGGTAGTTGGATTTGTTAATGCCGGTCTT ATGAATCTTGCACAAGCTGCTGGAGTAATCATGGGAGCAAATGTAGGTACAACTATTACGGCTCAACTTGTTGCCTTTAA ATTAGATGAAATTGCACCATTGTTTGTTATAGTAGGTGTTGTTTTATTAATGTCAGCAAAACAAAAGAAGAGAAAAGATA TTGCTGATATAATATTAGGTTTTGGTATCTTGTTTATGGGTATGGGAATAATGAGTTCAGCTTTAAAACCATTAGCTGAG TCACCAATATTTTCACAGCTTATAATGGCTATAGACGATAACTGGATTTTAGGAATATTTACAGGTTTAGTTCTTACAGC TATATTACAAAGTTCATCAGCTACTACAGGTATATTAATTGCCTTAGCATCAACTGGTTCTATAACTATAAATATAGTTT TACCAATACTATTTGGATGTAATATAGGAACATGTGTAACTGCTTTAATTGCAAGTATTGGAGCAAACAAAACAGCTCAC AAAGCTGCTGCCATACATTTAATGTTTAATATATTAGGTACACTTATATTTATACCATTCTTAAAACCTTTAGCATATAT TGTCCAAGATATGAGCCCTGGAGATGTTGAAAGACAAATAGCTAATGCTCATACAATATTCAATATAACTGCTACTATAA TACTTGTACCATTAAGTAAGTACATGATTATGATAGTTAACAAATTAATAAAAGGCGAAGATGAAATTGAACTTTGTGGA CCTAAGTACCTTGATGAAAGATTATTAGAAACACCAGTAATAGCTGCAGGTCAAGTTCAAAAGGAAACTTTAAGAATGGC TAATAAAGCTAAGGAAAATTTAGAGTTAAGTATGAAGGCTTTTAGAGAGAATAATGAAAGCTTAGTTAAAAAAGTATATG AAAATGAAAAACTTATAAATATATTAGAAGAAGAAATAACTGCTTACCTAGTTAAATTATCTAAATGTGATTTATCTGCT AAAGAAAGTAATTTAGTAGCATCAACTTTCCATATTGTAACTGATATTGAGAGAATAGGTGATCATGTTGAGAATATAGC TGATTTAACTTTAGAAAAGGTAGGAAGAAAATTAAAATATAGTGAAGATGCTTTAAAGGAAATAGATTATATATATGATC AAACAATTAGAGCTCTAGACATAACAATTGATGCTTATGCAAATGAAAATGTAGAGGAAGCTGGAACTATCTATGAAATA GAAAGAAAGATAGATGCTTCTCAAAAAGAATTTAGAGAAAATCATATTAAGAGATTAAGCCAAGGTTCTTGCAATGCTTA TGATGGTGCAATATTTATGGACTTATTAAGCAACTTTGAAAGAATTGGCGATCATTCTACTAACATAGCTGAAAGTGTTA TGGAAGTGCATTAA
Upstream 100 bases:
>100_bases GCAGTTATTATATTGTAAAATGTTATAGGATTGATATTTTAAAATTAAAAATAAAATAAGTTTGTATTTTACAAATTAAG CAAAGTGGAGGAGAAGTATC
Downstream 100 bases:
>100_bases AGATATTAAAGAATACCTAACATTAGGTATTCTTTTTTCTTTTACTTAGAATATTTCTTTATATATAGGAAAAAATAAAT TGAGTTTCATAATTCTAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 537; Mature: 537
Protein sequence:
>537_residues MKDAIFTLMEVAGGLGLFLFGMKLMGEGLENAAGDKLKSILEKVTKNPISAVLVGAFVTMVIQSSSATTVMVVGFVNAGL MNLAQAAGVIMGANVGTTITAQLVAFKLDEIAPLFVIVGVVLLMSAKQKKRKDIADIILGFGILFMGMGIMSSALKPLAE SPIFSQLIMAIDDNWILGIFTGLVLTAILQSSSATTGILIALASTGSITINIVLPILFGCNIGTCVTALIASIGANKTAH KAAAIHLMFNILGTLIFIPFLKPLAYIVQDMSPGDVERQIANAHTIFNITATIILVPLSKYMIMIVNKLIKGEDEIELCG PKYLDERLLETPVIAAGQVQKETLRMANKAKENLELSMKAFRENNESLVKKVYENEKLINILEEEITAYLVKLSKCDLSA KESNLVASTFHIVTDIERIGDHVENIADLTLEKVGRKLKYSEDALKEIDYIYDQTIRALDITIDAYANENVEEAGTIYEI ERKIDASQKEFRENHIKRLSQGSCNAYDGAIFMDLLSNFERIGDHSTNIAESVMEVH
Sequences:
>Translated_537_residues MKDAIFTLMEVAGGLGLFLFGMKLMGEGLENAAGDKLKSILEKVTKNPISAVLVGAFVTMVIQSSSATTVMVVGFVNAGL MNLAQAAGVIMGANVGTTITAQLVAFKLDEIAPLFVIVGVVLLMSAKQKKRKDIADIILGFGILFMGMGIMSSALKPLAE SPIFSQLIMAIDDNWILGIFTGLVLTAILQSSSATTGILIALASTGSITINIVLPILFGCNIGTCVTALIASIGANKTAH KAAAIHLMFNILGTLIFIPFLKPLAYIVQDMSPGDVERQIANAHTIFNITATIILVPLSKYMIMIVNKLIKGEDEIELCG PKYLDERLLETPVIAAGQVQKETLRMANKAKENLELSMKAFRENNESLVKKVYENEKLINILEEEITAYLVKLSKCDLSA KESNLVASTFHIVTDIERIGDHVENIADLTLEKVGRKLKYSEDALKEIDYIYDQTIRALDITIDAYANENVEEAGTIYEI ERKIDASQKEFRENHIKRLSQGSCNAYDGAIFMDLLSNFERIGDHSTNIAESVMEVH >Mature_537_residues MKDAIFTLMEVAGGLGLFLFGMKLMGEGLENAAGDKLKSILEKVTKNPISAVLVGAFVTMVIQSSSATTVMVVGFVNAGL MNLAQAAGVIMGANVGTTITAQLVAFKLDEIAPLFVIVGVVLLMSAKQKKRKDIADIILGFGILFMGMGIMSSALKPLAE SPIFSQLIMAIDDNWILGIFTGLVLTAILQSSSATTGILIALASTGSITINIVLPILFGCNIGTCVTALIASIGANKTAH KAAAIHLMFNILGTLIFIPFLKPLAYIVQDMSPGDVERQIANAHTIFNITATIILVPLSKYMIMIVNKLIKGEDEIELCG PKYLDERLLETPVIAAGQVQKETLRMANKAKENLELSMKAFRENNESLVKKVYENEKLINILEEEITAYLVKLSKCDLSA KESNLVASTFHIVTDIERIGDHVENIADLTLEKVGRKLKYSEDALKEIDYIYDQTIRALDITIDAYANENVEEAGTIYEI ERKIDASQKEFRENHIKRLSQGSCNAYDGAIFMDLLSNFERIGDHSTNIAESVMEVH
Specific function: Unknown
COG id: COG1283
COG function: function code P; Na+/phosphate symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yqeW [H]
Homologues:
Organism=Escherichia coli, GI1790451, Length=537, Percent_Identity=25.3258845437616, Blast_Score=194, Evalue=9e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003841 - InterPro: IPR004633 [H]
Pfam domain/function: PF02690 Na_Pi_cotrans [H]
EC number: NA
Molecular weight: Translated: 58459; Mature: 58459
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDAIFTLMEVAGGLGLFLFGMKLMGEGLENAAGDKLKSILEKVTKNPISAVLVGAFVTM CCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH VIQSSSATTVMVVGFVNAGLMNLAQAAGVIMGANVGTTITAQLVAFKLDEIAPLFVIVGV HHCCCCCCEEEEEHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH VLLMSAKQKKRKDIADIILGFGILFMGMGIMSSALKPLAESPIFSQLIMAIDDNWILGIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH TGLVLTAILQSSSATTGILIALASTGSITINIVLPILFGCNIGTCVTALIASIGANKTAH HHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEHHHHHHCCCHHHHHHHHHHHHCCCCHHH KAAAIHLMFNILGTLIFIPFLKPLAYIVQDMSPGDVERQIANAHTIFNITATIILVPLSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH YMIMIVNKLIKGEDEIELCGPKYLDERLLETPVIAAGQVQKETLRMANKAKENLELSMKA HHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FRENNESLVKKVYENEKLINILEEEITAYLVKLSKCDLSAKESNLVASTFHIVTDIERIG HHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH DHVENIADLTLEKVGRKLKYSEDALKEIDYIYDQTIRALDITIDAYANENVEEAGTIYEI HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHCCHHHHH ERKIDASQKEFRENHIKRLSQGSCNAYDGAIFMDLLSNFERIGDHSTNIAESVMEVH HHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure MKDAIFTLMEVAGGLGLFLFGMKLMGEGLENAAGDKLKSILEKVTKNPISAVLVGAFVTM CCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH VIQSSSATTVMVVGFVNAGLMNLAQAAGVIMGANVGTTITAQLVAFKLDEIAPLFVIVGV HHCCCCCCEEEEEHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH VLLMSAKQKKRKDIADIILGFGILFMGMGIMSSALKPLAESPIFSQLIMAIDDNWILGIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH TGLVLTAILQSSSATTGILIALASTGSITINIVLPILFGCNIGTCVTALIASIGANKTAH HHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEHHHHHHCCCHHHHHHHHHHHHCCCCHHH KAAAIHLMFNILGTLIFIPFLKPLAYIVQDMSPGDVERQIANAHTIFNITATIILVPLSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH YMIMIVNKLIKGEDEIELCGPKYLDERLLETPVIAAGQVQKETLRMANKAKENLELSMKA HHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FRENNESLVKKVYENEKLINILEEEITAYLVKLSKCDLSAKESNLVASTFHIVTDIERIG HHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH DHVENIADLTLEKVGRKLKYSEDALKEIDYIYDQTIRALDITIDAYANENVEEAGTIYEI HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHCCHHHHH ERKIDASQKEFRENHIKRLSQGSCNAYDGAIFMDLLSNFERIGDHSTNIAESVMEVH HHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]