| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is cycB [H]
Identifier: 18311325
GI number: 18311325
Start: 2699392
End: 2700618
Strand: Reverse
Name: cycB [H]
Synonym: CPE2343
Alternate gene names: 18311325
Gene position: 2700618-2699392 (Counterclockwise)
Preceding gene: 18311326
Following gene: 18311324
Centisome position: 89.09
GC content: 33.25
Gene sequence:
>1227_bases ATGGGAAAACGTACAAAAATTCTAGCAACTGTAATGGCTGCAACAATGTTATTTGCAGGATCATTAGTAGGATGTGGAGG GAAAGCTGATTCAGGTAGTACTGATGGTTCAGGAAAAGAACTTACAGTATGGTCACATTTAACTACTCCAGAAGTAGAAG AATTAAATAAAATAGCTTCAAAATGGGGAGAAGAAAATGGAGTTAAAGTTAAGGTTGTAGAAGACAAATCAGAAATGCAA GCTTACATACAAGCTGCAAATAGTTCAAAGGGACCAGATATAATGTTTGGACTAGCTCATGATAACTTAGGAACATTCCA AAAGGCTGGACTTTTAGCAGAGGTTCCAGAAGGAATTATAAATGATTCTGATTATGCATCACATCAAGTTTTAGATGCTG TAACAATAGGTGGAAAAAGATATGCAGTTCCAATAGCACAAGAAACATCAGCTCTTTTCTATAATAAGGATAAAGTTAAA GAAGTTCCAAAAACCATGGAAGATTTAGTTAAGGTTGCAAAAGATGGAGTTGGATTTGAATATGATATTAATAATTTCTA TCCTACTTATGGATTTATAGCAGCAGATGGAGGATATGTTTATAAAGATAATAATGGAACTCTTGACCCAACTGATATCG GATTAGGAACACCAGGAGCTATAAAAGGATATCAATTTGTTCAAGATTTAGTTCAAAAAGATAAATTAATGCCAGCTGAT ATAACTGGAGATATAGCAAAGGGAGATTTCTTATCTAAGAAATCAGGATTTTATATTTCAGGACCTTGGGATGTATCAGC ATTTAAAGATGGAGGAGTAAATTTTGGAGTAGCTCCAATACCAACATTATTTGGAAAACAAGTACCAACTTTCTTAGGTG TTCAAACTGCTTTCGTAAGTGAAAAATCTCAGAATAAAGATTTAGCATGGAAATTAGTTAAATACTTATCAGAAAATTCA GGTGATGTATTGTTAAGTAAAGGTAACAGAATTCCAGTATTAAATAAATACTTAGATAGTGCAGATTTCAAAAATAATGA GTATATGAGTGCTTTCGCAGAACAAGCTAAATTCGCTACACCAATGCCTAATATACCAGAAATTCAAGCTATGTGGGGAC CTGCTGGAGCTAACTTACAATTATTAACTTCAGGACAAGTTACACCAGAAAAATGTGCTGAAATGACAGTAGAACAAATT AAACAAGGTATATCTCAACAAAAATAA
Upstream 100 bases:
>100_bases TATGAGATATTTTTTTATAATATTTTGGTATCGTTTCCGAGAGTGAGAATGTAAATTTATAGCTTTTTAGCTAATTAAAA GTTATGAGGGGGATTTTATA
Downstream 100 bases:
>100_bases TTAAGAAGTTTTTATAGGGGGATGTAAATTCCCCCTTATTTATAGAAGTTTATATTAAAAAGAGGTATTTGAGGAGGCGA GATATAATGCAAGTTACGAG
Product: maltose ABC transporter
Products: ADP; phosphate; maltose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MGKRTKILATVMAATMLFAGSLVGCGGKADSGSTDGSGKELTVWSHLTTPEVEELNKIASKWGEENGVKVKVVEDKSEMQ AYIQAANSSKGPDIMFGLAHDNLGTFQKAGLLAEVPEGIINDSDYASHQVLDAVTIGGKRYAVPIAQETSALFYNKDKVK EVPKTMEDLVKVAKDGVGFEYDINNFYPTYGFIAADGGYVYKDNNGTLDPTDIGLGTPGAIKGYQFVQDLVQKDKLMPAD ITGDIAKGDFLSKKSGFYISGPWDVSAFKDGGVNFGVAPIPTLFGKQVPTFLGVQTAFVSEKSQNKDLAWKLVKYLSENS GDVLLSKGNRIPVLNKYLDSADFKNNEYMSAFAEQAKFATPMPNIPEIQAMWGPAGANLQLLTSGQVTPEKCAEMTVEQI KQGISQQK
Sequences:
>Translated_408_residues MGKRTKILATVMAATMLFAGSLVGCGGKADSGSTDGSGKELTVWSHLTTPEVEELNKIASKWGEENGVKVKVVEDKSEMQ AYIQAANSSKGPDIMFGLAHDNLGTFQKAGLLAEVPEGIINDSDYASHQVLDAVTIGGKRYAVPIAQETSALFYNKDKVK EVPKTMEDLVKVAKDGVGFEYDINNFYPTYGFIAADGGYVYKDNNGTLDPTDIGLGTPGAIKGYQFVQDLVQKDKLMPAD ITGDIAKGDFLSKKSGFYISGPWDVSAFKDGGVNFGVAPIPTLFGKQVPTFLGVQTAFVSEKSQNKDLAWKLVKYLSENS GDVLLSKGNRIPVLNKYLDSADFKNNEYMSAFAEQAKFATPMPNIPEIQAMWGPAGANLQLLTSGQVTPEKCAEMTVEQI KQGISQQK >Mature_407_residues GKRTKILATVMAATMLFAGSLVGCGGKADSGSTDGSGKELTVWSHLTTPEVEELNKIASKWGEENGVKVKVVEDKSEMQA YIQAANSSKGPDIMFGLAHDNLGTFQKAGLLAEVPEGIINDSDYASHQVLDAVTIGGKRYAVPIAQETSALFYNKDKVKE VPKTMEDLVKVAKDGVGFEYDINNFYPTYGFIAADGGYVYKDNNGTLDPTDIGLGTPGAIKGYQFVQDLVQKDKLMPADI TGDIAKGDFLSKKSGFYISGPWDVSAFKDGGVNFGVAPIPTLFGKQVPTFLGVQTAFVSEKSQNKDLAWKLVKYLSENSG DVLLSKGNRIPVLNKYLDSADFKNNEYMSAFAEQAKFATPMPNIPEIQAMWGPAGANLQLLTSGQVTPEKCAEMTVEQIK QGISQQK
Specific function: Binding protein for cyclodextrin; involved in its cellular uptake. Interacts with all natural cyclodextrins:alpha, beta and gamma [H]
COG id: COG2182
COG function: function code G; Maltose-binding periplasmic proteins/domains
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790466, Length=374, Percent_Identity=32.3529411764706, Blast_Score=160, Evalue=2e-40,
Paralogues:
None
Copy number: 660 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 720 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006060 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 43980; Mature: 43849
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01037 SBP_BACTERIAL_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKRTKILATVMAATMLFAGSLVGCGGKADSGSTDGSGKELTVWSHLTTPEVEELNKIAS CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH KWGEENGVKVKVVEDKSEMQAYIQAANSSKGPDIMFGLAHDNLGTFQKAGLLAEVPEGII HHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHCCCHHHCCHHHC NDSDYASHQVLDAVTIGGKRYAVPIAQETSALFYNKDKVKEVPKTMEDLVKVAKDGVGFE CCCCHHHHHHHHHEEECCCEEEEEECCCCCHHEECHHHHHHHHHHHHHHHHHHHCCCCEE YDINNFYPTYGFIAADGGYVYKDNNGTLDPTDIGLGTPGAIKGYQFVQDLVQKDKLMPAD EECCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC ITGDIAKGDFLSKKSGFYISGPWDVSAFKDGGVNFGVAPIPTLFGKQVPTFLGVQTAFVS CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC EKSQNKDLAWKLVKYLSENSGDVLLSKGNRIPVLNKYLDSADFKNNEYMSAFAEQAKFAT CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCC PMPNIPEIQAMWGPAGANLQLLTSGQVTPEKCAEMTVEQIKQGISQQK CCCCCCCHHEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GKRTKILATVMAATMLFAGSLVGCGGKADSGSTDGSGKELTVWSHLTTPEVEELNKIAS CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH KWGEENGVKVKVVEDKSEMQAYIQAANSSKGPDIMFGLAHDNLGTFQKAGLLAEVPEGII HHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHCCCHHHCCHHHC NDSDYASHQVLDAVTIGGKRYAVPIAQETSALFYNKDKVKEVPKTMEDLVKVAKDGVGFE CCCCHHHHHHHHHEEECCCEEEEEECCCCCHHEECHHHHHHHHHHHHHHHHHHHCCCCEE YDINNFYPTYGFIAADGGYVYKDNNGTLDPTDIGLGTPGAIKGYQFVQDLVQKDKLMPAD EECCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC ITGDIAKGDFLSKKSGFYISGPWDVSAFKDGGVNFGVAPIPTLFGKQVPTFLGVQTAFVS CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC EKSQNKDLAWKLVKYLSENSGDVLLSKGNRIPVLNKYLDSADFKNNEYMSAFAEQAKFAT CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCC PMPNIPEIQAMWGPAGANLQLLTSGQVTPEKCAEMTVEQIKQGISQQK CCCCCCCHHEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; maltose [Periplasm]; H2O [C]
Specific reaction: ATP + maltose [Periplasm] + H2O = ADP + phosphate + maltose [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]