| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is yabG [H]
Identifier: 18311199
GI number: 18311199
Start: 2538939
End: 2539826
Strand: Reverse
Name: yabG [H]
Synonym: CPE2217
Alternate gene names: 18311199
Gene position: 2539826-2538939 (Counterclockwise)
Preceding gene: 18311200
Following gene: 18311198
Centisome position: 83.78
GC content: 28.49
Gene sequence:
>888_bases ATGAAAGTTGGAGATTTAGTAGTAAGAAAATCATATAGTAAGGATATAACTTTTAAAATTATAGATATTAAAGAAAATGA GGAAGGAATAACTTATATTTTAAAGGGGCTTCATATAAGGATAATAGCTGACTCTAAGAGAGAGGATTTAGAAAAAGTTG AGGATGACTTTGCTGGAGATAAAGATAAATCCTTTGATTCTAAAATGAATGATATCATTAAAAAAGTAATTTTGAGTAGA GAACAGAAAAATAATCAATTAATGACAAGAGGAAGTGAAGAGGATAATTTAAAAAGGACAGAAAAAGAAAAAGGGTTAGT ATTTGGAAGACCTGGACGAATACTTCATATAGATGGAGATCCATCATATATGGAAACCTGCTTAAAGGCGTACAAGCAAT TAAACTTAAATGCTGTAGGAATAGCAGTATCCGAAAGAGAACAACCTTTAAAAATTTTATCTTTAGTTAAGGAATATAAT CCAGATATAGTTGTATTAACTGGCCATGATGGGGTTCTTAAAGATTCTAAGGGAATGCTTGATTTAAATAATTATAGAAA CTCAAAGTATTTTATTGAATCTGTAAAAATTTTAAGAAATTATAATTCAAGTTATGATGAGCTTGTTATTTTTGCTGGTG CTTGTCAATCTTGTTATGAAAGTATTTTAGAAGCAGGTGCTAATTTTGCAAGTTCACCTAATAGGGTACTTATACATTGT TTAGATCCAGTTTTAGTATGTGAAAGAGTTGCATATACAAGAATAGATGAAATTGTTTCAATAAAAGATGTTATAGAAAA TACAATAACTGGAATAAAAGGAGTGGGTGGATTACAAACTAGAGGAAAATATAGAGAAGGTTATCCAAAATCCTTATATT TAAATTAA
Upstream 100 bases:
>100_bases AATAAAAAAACAATAAATTACATGAGTATATAGTATCAGCACACTTACAAATAAATCTTCATATTATGATAATAGGACTA TATAAGTTAGGAGAAGGTAT
Downstream 100 bases:
>100_bases TAGAATAAAATAAGACATTTAAGTTAATAATATAATTGGATGTTTTAGTTTAAATATAGTATATTTTTGTTGACAAGACA TGGACTTATATAGTAAAATT
Product: peptidase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKREDLEKVEDDFAGDKDKSFDSKMNDIIKKVILSR EQKNNQLMTRGSEEDNLKRTEKEKGLVFGRPGRILHIDGDPSYMETCLKAYKQLNLNAVGIAVSEREQPLKILSLVKEYN PDIVVLTGHDGVLKDSKGMLDLNNYRNSKYFIESVKILRNYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHC LDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN
Sequences:
>Translated_295_residues MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKREDLEKVEDDFAGDKDKSFDSKMNDIIKKVILSR EQKNNQLMTRGSEEDNLKRTEKEKGLVFGRPGRILHIDGDPSYMETCLKAYKQLNLNAVGIAVSEREQPLKILSLVKEYN PDIVVLTGHDGVLKDSKGMLDLNNYRNSKYFIESVKILRNYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHC LDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN >Mature_295_residues MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKREDLEKVEDDFAGDKDKSFDSKMNDIIKKVILSR EQKNNQLMTRGSEEDNLKRTEKEKGLVFGRPGRILHIDGDPSYMETCLKAYKQLNLNAVGIAVSEREQPLKILSLVKEYN PDIVVLTGHDGVLKDSKGMLDLNNYRNSKYFIESVKILRNYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHC LDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN
Specific function: Cleaves the spore coat proteins spoIVA and safA. May cooperate with tgl to mediate the temperature-dependent cross- linking of coat proteins like gerQ [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Forespore outer membrane. Note=Synthesized in the mother cell compartment and assembled on the surface of the forespore [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U57 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008764 - ProDom: PD127708 [H]
Pfam domain/function: PF05582 Peptidase_U57 [H]
EC number: NA
Molecular weight: Translated: 33398; Mature: 33398
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKREDLEKVEDDFAGD CCCCHHHHHHCCCCCEEEEEEEECCCCCCHHHEECCCEEEEEECCCHHHHHHHHHHHCCC KDKSFDSKMNDIIKKVILSREQKNNQLMTRGSEEDNLKRTEKEKGLVFGRPGRILHIDGD CCCCHHHHHHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHCCEEEECCCCEEEECCC PSYMETCLKAYKQLNLNAVGIAVSEREQPLKILSLVKEYNPDIVVLTGHDGVLKDSKGML HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCE DLNNYRNSKYFIESVKILRNYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHC ECCCCCCCHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEEE LDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCC >Mature Secondary Structure MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKREDLEKVEDDFAGD CCCCHHHHHHCCCCCEEEEEEEECCCCCCHHHEECCCEEEEEECCCHHHHHHHHHHHCCC KDKSFDSKMNDIIKKVILSREQKNNQLMTRGSEEDNLKRTEKEKGLVFGRPGRILHIDGD CCCCHHHHHHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHCCEEEECCCCEEEECCC PSYMETCLKAYKQLNLNAVGIAVSEREQPLKILSLVKEYNPDIVVLTGHDGVLKDSKGML HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCE DLNNYRNSKYFIESVKILRNYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHC ECCCCCCCHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEEE LDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]