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The map label for this gene is secF [H]

Identifier: 17547435

GI number: 17547435

Start: 2922556

End: 2923524

Strand: Direct

Name: secF [H]

Synonym: RSc2716

Alternate gene names: 17547435

Gene position: 2922556-2923524 (Clockwise)

Preceding gene: 17547434

Following gene: 17547440

Centisome position: 78.64

GC content: 63.57

Gene sequence:

>969_bases
ATGGAGTTTTTCCGCATCCGCCGCGACATTCCGTTCATGAAGCACGCGTTGGCCTTCAACGCCGTGTCGTTCCTGACGTT
CCTCGCCGCCGTCTTCTTCCTGTTCCACAACGGGCTGCATCTGTCGGTGGAATTCACAGGCGGCACCGTGATGGAAGTCG
CCTACACCCAGGCCGCCGACCTGCCGAAGGTCCGCGCCGACGTCGAGAAGCTCGGCTACGCCGATGCCCAGGTGCAGAAC
TTCGGCACCTCGCACGACGTGATGATCCGCCTGCCGCTCAAGAACGGCCCGGACGGCAAGCCGATCGCCTCGGCCGTGCA
GAGCCAGCAGGTGATGTCGTCGCTGATCGCCACCACGCCGGACGTCAAGCTGCAGCGCGTGGAGTTCGTCGGCCCGCAAG
TCGGCAAGGAACTGGCGACCGACGGCCTGCTGGCGCTGCTGTTCGTGGTGATCGGCATCGTGATCTACCTGTCGATCCGC
TTCGAATGGAAGTTCGCGGTGGCGGGCATCATCGCCAACCTGCACGACATCGTGATCATCCTGGGCTTCTTCGCCTTCTT
CCAGTGGGAGTTCTCGCTGTCGGTGCTGGCGGCGGTGCTGGCGGTGCTGGGCTACTCGGTCAACGAATCGGTGGTGATCT
TCGACCGGATCCGCGAAGCCTTCCGCAAGTACCGCAAGATGAACACGCACGAGGTGATCGACCACGCCATCACCAGCACC
ATCTCGCGGACCATCATCACCCACGGCTCGACCGAGATGATGGTGCTGTCGATGCTGGTGTTCGGCGGCCCGACGCTGCA
CTACTTCGCGCTGGCGCTGACCATCGGCATCCTGTTCGGCATCTATTCGTCGGTGTTCGTGGCGGCCGCGCTGTGCATGT
GGCTCGGCGTCAAGCGCGAAGACCTGGTCAAGGGCGAGAAGAAGACCACCGGCCCGACGGACGATCCGAACTTCGGCGCG
CAGGTCTGA

Upstream 100 bases:

>100_bases
CCGAAAGTCCGGCCAAGCAGTAACGCTACGACGACCTCACCGCATCGCGCATAACCGGCACCGGCCCGACTGACGGGCCG
CTTGCCACAAAGGGCAGAAC

Downstream 100 bases:

>100_bases
CCCCTCCCCCGCGTCACGCAGACACAAAAAAAGCCCCGCGATATCGCGGGGCTTTTCATTGGGCGCTGCGCCGGCTTATT
GCTGGGCGACGCTGGCGTCC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MEFFRIRRDIPFMKHALAFNAVSFLTFLAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAADLPKVRADVEKLGYADAQVQN
FGTSHDVMIRLPLKNGPDGKPIASAVQSQQVMSSLIATTPDVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIR
FEWKFAVAGIIANLHDIVIILGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRKMNTHEVIDHAITST
ISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKREDLVKGEKKTTGPTDDPNFGA
QV

Sequences:

>Translated_322_residues
MEFFRIRRDIPFMKHALAFNAVSFLTFLAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAADLPKVRADVEKLGYADAQVQN
FGTSHDVMIRLPLKNGPDGKPIASAVQSQQVMSSLIATTPDVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIR
FEWKFAVAGIIANLHDIVIILGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRKMNTHEVIDHAITST
ISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKREDLVKGEKKTTGPTDDPNFGA
QV
>Mature_322_residues
MEFFRIRRDIPFMKHALAFNAVSFLTFLAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAADLPKVRADVEKLGYADAQVQN
FGTSHDVMIRLPLKNGPDGKPIASAVQSQQVMSSLIATTPDVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIR
FEWKFAVAGIIANLHDIVIILGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRKMNTHEVIDHAITST
ISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKREDLVKGEKKTTGPTDDPNFGA
QV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=311, Percent_Identity=37.2990353697749, Blast_Score=238, Evalue=4e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35576; Mature: 35576

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFFRIRRDIPFMKHALAFNAVSFLTFLAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEHHHHHHHCC
LPKVRADVEKLGYADAQVQNFGTSHDVMIRLPLKNGPDGKPIASAVQSQQVMSSLIATTP
CHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC
DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII
CCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHH
LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRKMNTHEVIDHAITST
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKRE
HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
DLVKGEKKTTGPTDDPNFGAQV
HHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEFFRIRRDIPFMKHALAFNAVSFLTFLAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEHHHHHHHCC
LPKVRADVEKLGYADAQVQNFGTSHDVMIRLPLKNGPDGKPIASAVQSQQVMSSLIATTP
CHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC
DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII
CCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHH
LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRKMNTHEVIDHAITST
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKRE
HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
DLVKGEKKTTGPTDDPNFGAQV
HHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]