| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is pehB [H]
Identifier: 17546475
GI number: 17546475
Start: 1878639
End: 1880747
Strand: Direct
Name: pehB [H]
Synonym: RSc1756
Alternate gene names: 17546475
Gene position: 1878639-1880747 (Clockwise)
Preceding gene: 17546473
Following gene: 17546478
Centisome position: 50.55
GC content: 64.34
Gene sequence:
>2109_bases ATGCGACAAAGAAAAATGGGGCGTGGTGCCGCCCTGCTGCTGGCGGCGATGCTGGCCGGTGCGTTGGTAGCCTGCGGCTC GGGCGAGGGCGATGGCGCTTCCGGCTTGTCCGTTTCAGGCGGCACCGCGCAGACGACCACGCAGACGGTCGGCTCGACCT GCTCCCCGGTCAATGTGCGGGCGACCAGCGGCACCCGCTCGACCGTGCCGCAGCATCCGTGCGTTCCGGCGCTCGCCTAT GACGACACCAGCATCACGCTGGCCTGGAACAAGCCGGACATCTATGCCGATGTGGCCGATTACAACGTTTACATGAACGG GACGAAACTCGGCAGCGCATCGGAAAACAATGCGGTGCATTCCGTCGCGAAACGCTATATCGATCGCTTTTATGCGGAGG ACACGGCGGGTTTTCACACCAGAATGACCTTTCACAGCTTTCGCGTGACGGGGCTGGCTCCGGATACGGCTTATACCTTC ACCATCCGGTCGGTGGATCGTTCCGGAAAGGAATCCGCCGACAGCGTGCCCGTCGTGCACAGGACAGCCGCCGCTTTCAC GCGCGTCTATGACGTGGCGAAACTGGGCGCCAGGGGCGATGGCGCGACGCTGAATACGGCCGTCATCCAGAAGGCGATCG ACGACTGCGCCGGCACGTCCACCACGGCGTACGGGTGCAAGGTGCTGATTCCCGCCGACGATGCGGGCGGCGCCGTGTTT GTGAGCGGCGCCCTGTTCCTCAGAAGCAACATGACACTGGAGGTTGCCGAAGGCGCGACGTTGCGCGGGTCCGCCGACGC GGCGGATTACCCGCTCGCCAAGGGGTACCAGCTGTACAGCTATTTCACCAACGTGACGGACGATCGCCGTCCGCCGTCGT TGCTGAATACGCTCAGTCCCGCGCACATGAACGGCGCGACGGCATTGGCCGACCACCAGGGCTACGACGACAGGCGCGGG GTGTTCAGCAACATCCGGGTCACCGGCAAGGGCACGCTGGACGGCAGCGGATGGGTGCGCCGCGGCACCGACACGATCGA TGAGGTCGGCAACCGTCTCGCCAGCTTCGCGCCCGGCAATGCCAGCAAGTGGAGCACCCTCGGCGTGCTGGCCAAGCGCC AGATGCTCGCGGCCCAGGCCGAAGCCGGCGGCACGCTCGACTCGACCCAGAACGCGAACTACTACAGCAACCGCCGATCG AGCCTTGCCACCTTTCGCGGCACGCGCAACCTCTATTTCGGCGATCTGACGCTGACCAACCCGGCGCTCCATGGCGTCAT GTTCATCGAGAGCGACAACATGGTGTTCGCCAACACGGTCACGCAGACGTTCGATATCAACAACGCGGACGGCGTGGAAT TCGGCAACAGCAGCAACGCCGTCGTGTTCAACAATTTCATCGACAGCGGCGACGACAACATCAACTTTGCCGCCGGCCAG GGCAAGAACTATGAGGGGGGCACGCCCCAGCAGTACGCATGGATCTTCAACAACTACATGCGCGAGGGCCACGGGGGTGT GGTGGCCGGCAGCCATACCGGCGCGTGGATCCAGGACATCCTCGCCGAGGACAACGTGATGTTCATGACCGACAACGGGC TGCGCCTCAAGAGCACGCCGGCCACGGGCGGCGGCGCGCGGCGCATCGTATTCCGCGACACCGCCATGCGGGAGGTCGGC ACCAAGAACAGCGTGTCGGCAGGGGGGCAGACCTTCGCCAACAACACCAATGGCAGCCCGTTCATTCTCACGTTGTCGTA TAGCGCCGGCAGCAACGTGTTCGACAACGCAGCCGCCGCGGCCCAATTCCGCGATATCACCGTCAATCGCGTGACGATCG ACAACGGCAATCCGGGCACCGGCGGGGCGATGATCTCGGTGGACGGCTATGACGGCACCGATCCGTCGCTGGGCTATCCC GAAACGTTCCACGAGAACGTGCTGTTCGACACGGTGAGCATCACCCGCGCGAAGCCCGCCAGCATCAGCCGCCTCAAGGA CAGTACCTTCAAGGACGTGACGATCACGAACTGGGGCACAGCGGCGACGCCCTGGTCGATTCGCGACGCTTCCGGGCTGA CCTTCAGCAACGTGAAGCCGGCGCCCTAG
Upstream 100 bases:
>100_bases GCGAATGCAATGGCTGCGGTCAATGCGGGTGGCAAGACATCCGGATGATCCCGCATCGCCCATTGCGGCCGCATCCTGTT TTGAAAAGTGGAGAAGTGCA
Downstream 100 bases:
>100_bases TCGCGCCGCCGACGGCCGGCCTTGAGCCCCGGTGCCGGCCTGGCGCCGCCCGCTCCGATTGGCGCGCGGTGCCGGCCAGG GCCCGGCGTCAATGACGGCA
Product: exo-poly-galacturonase signal peptide protein
Products: NA
Alternate protein names: Exo-PG [H]
Number of amino acids: Translated: 702; Mature: 702
Protein sequence:
>702_residues MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVRATSGTRSTVPQHPCVPALAY DDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVHSVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTF TIRSVDRSGKESADSVPVVHRTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSPAHMNGATALADHQGYDDRRG VFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGNASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRS SLATFRGTRNLYFGDLTLTNPALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTPATGGGARRIVFRDTAMREVG TKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAAAQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYP ETFHENVLFDTVSITRAKPASISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP
Sequences:
>Translated_702_residues MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVRATSGTRSTVPQHPCVPALAY DDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVHSVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTF TIRSVDRSGKESADSVPVVHRTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSPAHMNGATALADHQGYDDRRG VFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGNASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRS SLATFRGTRNLYFGDLTLTNPALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTPATGGGARRIVFRDTAMREVG TKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAAAQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYP ETFHENVLFDTVSITRAKPASISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP >Mature_702_residues MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVRATSGTRSTVPQHPCVPALAY DDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVHSVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTF TIRSVDRSGKESADSVPVVHRTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSPAHMNGATALADHQGYDDRRG VFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGNASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRS SLATFRGTRNLYFGDLTLTNPALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTPATGGGARRIVFRDTAMREVG TKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAAAQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYP ETFHENVLFDTVSITRAKPASISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP
Specific function: Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers [H]
COG id: COG5434
COG function: function code M; Endopolygalacturonase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 PbH1 repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR000743 - InterPro: IPR013783 - InterPro: IPR006626 - InterPro: IPR012334 - InterPro: IPR011050 [H]
Pfam domain/function: PF00041 fn3; PF00295 Glyco_hydro_28 [H]
EC number: =3.2.1.82 [H]
Molecular weight: Translated: 74270; Mature: 74270
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVR CCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCCCEEEE ATSGTRSTVPQHPCVPALAYDDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVH ECCCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEECEEEEECCCCCCCCCCCHHHH SVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTFTIRSVDRSGKESADSVPVVH HHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHH RTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEE VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSP EEEEEEEECCCEEEECCCCEECCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCHHHHCCCC AHMNGATALADHQGYDDRRGVFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGN CCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCHHHHHHHHHHHCCCCC ASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRSSLATFRGTRNLYFGDLTLTN CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHEECCCCCEEEEEEEECC PALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ CCCEEEEEEECCCEEEEEEEEEEEECCCCCCCEECCCCCEEEEECCCCCCCCCEEEEECC GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTP CCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCEEEEECCCEEEECCC ATGGGARRIVFRDTAMREVGTKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAA CCCCCEEEEEEECHHHHHCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCHHCCHHHH AQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYPETFHENVLFDTVSITRAKPA HHEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCEEEEEEEECCCCCC SISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCC >Mature Secondary Structure MRQRKMGRGAALLLAAMLAGALVACGSGEGDGASGLSVSGGTAQTTTQTVGSTCSPVNVR CCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCCCEEEE ATSGTRSTVPQHPCVPALAYDDTSITLAWNKPDIYADVADYNVYMNGTKLGSASENNAVH ECCCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEECEEEEECCCCCCCCCCCHHHH SVAKRYIDRFYAEDTAGFHTRMTFHSFRVTGLAPDTAYTFTIRSVDRSGKESADSVPVVH HHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHH RTAAAFTRVYDVAKLGARGDGATLNTAVIQKAIDDCAGTSTTAYGCKVLIPADDAGGAVF HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEE VSGALFLRSNMTLEVAEGATLRGSADAADYPLAKGYQLYSYFTNVTDDRRPPSLLNTLSP EEEEEEEECCCEEEECCCCEECCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCHHHHCCCC AHMNGATALADHQGYDDRRGVFSNIRVTGKGTLDGSGWVRRGTDTIDEVGNRLASFAPGN CCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCHHHHHHHHHHHCCCCC ASKWSTLGVLAKRQMLAAQAEAGGTLDSTQNANYYSNRRSSLATFRGTRNLYFGDLTLTN CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHEECCCCCEEEEEEEECC PALHGVMFIESDNMVFANTVTQTFDINNADGVEFGNSSNAVVFNNFIDSGDDNINFAAGQ CCCEEEEEEECCCEEEEEEEEEEEECCCCCCCEECCCCCEEEEECCCCCCCCCEEEEECC GKNYEGGTPQQYAWIFNNYMREGHGGVVAGSHTGAWIQDILAEDNVMFMTDNGLRLKSTP CCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCEEEEECCCEEEECCC ATGGGARRIVFRDTAMREVGTKNSVSAGGQTFANNTNGSPFILTLSYSAGSNVFDNAAAA CCCCCEEEEEEECHHHHHCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCHHCCHHHH AQFRDITVNRVTIDNGNPGTGGAMISVDGYDGTDPSLGYPETFHENVLFDTVSITRAKPA HHEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCEEEEEEEECCCCCC SISRLKDSTFKDVTITNWGTAATPWSIRDASGLTFSNVKPAP HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2168372; 1409594 [H]