| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is 17546422
Identifier: 17546422
GI number: 17546422
Start: 1819464
End: 1820009
Strand: Direct
Name: 17546422
Synonym: RSc1703
Alternate gene names: NA
Gene position: 1819464-1820009 (Clockwise)
Preceding gene: 17546421
Following gene: 17546427
Centisome position: 48.96
GC content: 65.93
Gene sequence:
>546_bases ATGCCGGGCATCAAGGGAACGGCCATCGCGGCCGCGATCGCGATGCTGCTGGGGGCGCTTGTCGGCGCTGCAGGTGCGTG GACATGGCAGGCGCACCGCTACGACAAAGACATCGCCACGCTGCAGCGTGATCAGGCGGAGAAGGATCGCCAGCAGGCCC GCGCCGACGAGGCGCAACTGCGGCAGGAGCGGGAAAAGCGCGCGGGGCTGGAGCGCCAGCTCGGCGAGCTCGACGCACGT CACTATGAGGAACTGAACAATGCCAAAACTGAAAACGCGCGCCTGGCTGCTGCTCTTGCTGCCGGCACTCGCCAGCTGTC AATCCGCGCCCGTTGTACAGCCCCGGCCGACGGCGTGCCAAGCACCACCAGCGGCGCCGGCCTGGGCGATGGTGGCGCCG CCACAGCAATCCTTTACGGAGAGGATGCAGCGGATATTCAAGCTCTCGTCGCCGACGCAGATGCCATCGCAGCAGCCTTG AGGTTTTTTCAGGGCCGAGAGCGAGCAATCCAGACGCGGGATACATCCGTGGATGCTCGGCGATGA
Upstream 100 bases:
>100_bases AAGTGGCGCTCAACGTAGCTGTGGCACTTTGCGTCGTCTGGGCGTTCTGGCGCTTGGAGGTGCGGCGCCGTTTTTCGGCA CTCGGAAAAGGGAGGGGTTG
Downstream 100 bases:
>100_bases GGGCGGGATGACCGGCCGGCGATAGAGCGCTGGCCAAGCGCTAGGTTGGGAGCGTCACGATCGCTGGGCTTCGCCTTTTG CCTGTGCGCGCTTTTTCATG
Product: bacteriophage-like signal peptide protein
Products: NA
Alternate protein names: Bacteriophage-Like Signal Peptide Protein
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MPGIKGTAIAAAIAMLLGALVGAAGAWTWQAHRYDKDIATLQRDQAEKDRQQARADEAQLRQEREKRAGLERQLGELDAR HYEELNNAKTENARLAAALAAGTRQLSIRARCTAPADGVPSTTSGAGLGDGGAATAILYGEDAADIQALVADADAIAAAL RFFQGRERAIQTRDTSVDARR
Sequences:
>Translated_181_residues MPGIKGTAIAAAIAMLLGALVGAAGAWTWQAHRYDKDIATLQRDQAEKDRQQARADEAQLRQEREKRAGLERQLGELDAR HYEELNNAKTENARLAAALAAGTRQLSIRARCTAPADGVPSTTSGAGLGDGGAATAILYGEDAADIQALVADADAIAAAL RFFQGRERAIQTRDTSVDARR >Mature_180_residues PGIKGTAIAAAIAMLLGALVGAAGAWTWQAHRYDKDIATLQRDQAEKDRQQARADEAQLRQEREKRAGLERQLGELDARH YEELNNAKTENARLAAALAAGTRQLSIRARCTAPADGVPSTTSGAGLGDGGAATAILYGEDAADIQALVADADAIAAALR FFQGRERAIQTRDTSVDARR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19210; Mature: 19078
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGIKGTAIAAAIAMLLGALVGAAGAWTWQAHRYDKDIATLQRDQAEKDRQQARADEAQL CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RQEREKRAGLERQLGELDARHYEELNNAKTENARLAAALAAGTRQLSIRARCTAPADGVP HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCC STTSGAGLGDGGAATAILYGEDAADIQALVADADAIAAALRFFQGRERAIQTRDTSVDAR CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC R C >Mature Secondary Structure PGIKGTAIAAAIAMLLGALVGAAGAWTWQAHRYDKDIATLQRDQAEKDRQQARADEAQL CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RQEREKRAGLERQLGELDARHYEELNNAKTENARLAAALAAGTRQLSIRARCTAPADGVP HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCC STTSGAGLGDGGAATAILYGEDAADIQALVADADAIAAALRFFQGRERAIQTRDTSVDAR CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC R C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA