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The map label for this gene is rbn [C]

Identifier: 17546278

GI number: 17546278

Start: 1674515

End: 1675840

Strand: Direct

Name: rbn [C]

Synonym: RSc1559

Alternate gene names: 17546278

Gene position: 1674515-1675840 (Clockwise)

Preceding gene: 17546274

Following gene: 17546282

Centisome position: 45.06

GC content: 68.1

Gene sequence:

>1326_bases
ATGCAGTTCGATACCCGTGTGCTCCGCCAATGGAATGTCCCGAAGCTGCGTGCGCTGCAGCGCTATGCACTGCGGCGCGC
GGGCGAGGACAGCCTGCCGCAGGTGGCGGGCAGCCTGACCTTCACCACGGTGCTGTCGCTGGTGCCGATCCTGACGGTGG
CGTTCGCGCTGTTCACCGCGTTCCCGATGTTCCAGAGCTTTCGGGCGGCCATCGAGGGCTACCTGTTCAGCAACCTCGTA
CCGGGCAACATCAGCCGGCCGATCCTGACGTATCTGAACCAGTTCTCGCACAACGCCAAGGGGCTGACGGCCGCCGGCCT
GGTCGGCCTCGTCGTCACGTCGGTGATGACCATGCTCACGGTCGAGAACGCCCTCAACGCCATCTGGCGCGTGCGCCAGC
GCCGGCCGCTGGCGCAGCGCGTGCTGGTGTTCTGGGCGCTGGTCAGCTTCGGGCCGGTGCTGATCGGCGCGAGCCTGTCG
GTCAGCTCGTACCTGGTGTCGGTCTCGGCGGGCTACGTCGCCAAGCTGCCGTATGGGCTGGGCGTGGTGGTGGGGCTGGT
GCCGATCCTGCTGTCGGCCATCGCGTTCGCCATGCTGTATGTGTTCGTGCCGAACACCCTCGTTGCGTGGCGCGATGCGT
TCCTGGCGGGGCTGGTTGCCGCCGTGGCCTTCGAAATCGCCAAGCGCGGCTTCGGCTATTACGTGGCGCGCTTTCCCACC
TACACGGCGGTCTACGGGACCTTTGCCGCGCTGCCGATCTTCCTGCTGTGGATCTACGTCAGCTGGCTGGTGACGCTGCT
GGGCGCGACCATCGCCGCCACCTTACCGATCATCCGCCAGGGCTATTGGCAGCGCCGCGCCTTCCCGGGCAGTGAGTTTT
TCGATGCGCTCGGCATCCTGCTGCTGCTGCACCGCGCGCGCGACCACGCGCCACGCACGCTCGGCGAACTGGACATCGGC
CGGCGCCTGCAGCTGGAGGCGGATTACGTGGCCGACCTGCTGATCCAACTGAAGACGCTGCATCTGGTCGGCAAGCTGCA
GCAGGATCGCGGGCAGGCGCATTGGGCGCTGCTGTGCGACGCGCATACCACCACGCTGCGCCCGCTTTACGAGAAGCTGG
TGCTGAGCTTGCCACGGCTGTCGCGCACGGCGTTCGCGCATCAACTGGGCGATACGCGCGTACTCGAGGCCCAGCTCCAC
AACCCGGCGCTGGATTGCACGCTGGAAGCCGTGTTCGCGTCCGGTGAGCCCGGCGTGGTGAAGGCCGCTGCCGAAGCCGC
GGCCGCGCCGGCCGCCGCAACGCTGGCGGCGTCCGCCCGCGCCTGA

Upstream 100 bases:

>100_bases
GTACAGGACGAGGATGTCTTTCATGGCGATGCGCAAAGAGGGTCGCGGTATTATAGTTGCGGCCCCGAACGCGCTTCATC
CGCTCCCAGTCTGATTCTTC

Downstream 100 bases:

>100_bases
GCCGCGTCCGGAAGCCGGTCAGAACGGAATCTTGCCGATCCAGATGTCGCGGTACATCACCCAGTCGCCCATGAGGCTGT
AGATCGGGTGGCGGAAGGTG

Product: ribonuclease BN transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MQFDTRVLRQWNVPKLRALQRYALRRAGEDSLPQVAGSLTFTTVLSLVPILTVAFALFTAFPMFQSFRAAIEGYLFSNLV
PGNISRPILTYLNQFSHNAKGLTAAGLVGLVVTSVMTMLTVENALNAIWRVRQRRPLAQRVLVFWALVSFGPVLIGASLS
VSSYLVSVSAGYVAKLPYGLGVVVGLVPILLSAIAFAMLYVFVPNTLVAWRDAFLAGLVAAVAFEIAKRGFGYYVARFPT
YTAVYGTFAALPIFLLWIYVSWLVTLLGATIAATLPIIRQGYWQRRAFPGSEFFDALGILLLLHRARDHAPRTLGELDIG
RRLQLEADYVADLLIQLKTLHLVGKLQQDRGQAHWALLCDAHTTTLRPLYEKLVLSLPRLSRTAFAHQLGDTRVLEAQLH
NPALDCTLEAVFASGEPGVVKAAAEAAAAPAAATLAASARA

Sequences:

>Translated_441_residues
MQFDTRVLRQWNVPKLRALQRYALRRAGEDSLPQVAGSLTFTTVLSLVPILTVAFALFTAFPMFQSFRAAIEGYLFSNLV
PGNISRPILTYLNQFSHNAKGLTAAGLVGLVVTSVMTMLTVENALNAIWRVRQRRPLAQRVLVFWALVSFGPVLIGASLS
VSSYLVSVSAGYVAKLPYGLGVVVGLVPILLSAIAFAMLYVFVPNTLVAWRDAFLAGLVAAVAFEIAKRGFGYYVARFPT
YTAVYGTFAALPIFLLWIYVSWLVTLLGATIAATLPIIRQGYWQRRAFPGSEFFDALGILLLLHRARDHAPRTLGELDIG
RRLQLEADYVADLLIQLKTLHLVGKLQQDRGQAHWALLCDAHTTTLRPLYEKLVLSLPRLSRTAFAHQLGDTRVLEAQLH
NPALDCTLEAVFASGEPGVVKAAAEAAAAPAAATLAASARA
>Mature_441_residues
MQFDTRVLRQWNVPKLRALQRYALRRAGEDSLPQVAGSLTFTTVLSLVPILTVAFALFTAFPMFQSFRAAIEGYLFSNLV
PGNISRPILTYLNQFSHNAKGLTAAGLVGLVVTSVMTMLTVENALNAIWRVRQRRPLAQRVLVFWALVSFGPVLIGASLS
VSSYLVSVSAGYVAKLPYGLGVVVGLVPILLSAIAFAMLYVFVPNTLVAWRDAFLAGLVAAVAFEIAKRGFGYYVARFPT
YTAVYGTFAALPIFLLWIYVSWLVTLLGATIAATLPIIRQGYWQRRAFPGSEFFDALGILLLLHRARDHAPRTLGELDIG
RRLQLEADYVADLLIQLKTLHLVGKLQQDRGQAHWALLCDAHTTTLRPLYEKLVLSLPRLSRTAFAHQLGDTRVLEAQLH
NPALDCTLEAVFASGEPGVVKAAAEAAAAPAAATLAASARA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=256, Percent_Identity=40.234375, Blast_Score=203, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1559_RALSO (Q8XZ47)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_519680.1
- GeneID:   1220390
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc1559
- NMPDR:   fig|267608.1.peg.1559
- HOGENOM:   HBG451793
- OMA:   SVMTMMT
- ProtClustDB:   CLSK897009
- BioCyc:   RSOL267608:RSC1559-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 48106; Mature: 48106

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd4c2fec)-; HASH(0xd6f785c)-; HASH(0xd1c5ba8)-; HASH(0xd3dca24)-; HASH(0xd4add58)-; HASH(0xd554444)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCHHHHHHHHCCH
>Mature Secondary Structure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HHHHHHHHCCHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852