| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545595
Identifier: 17545595
GI number: 17545595
Start: 913304
End: 914479
Strand: Direct
Name: 17545595
Synonym: RSc0876
Alternate gene names: NA
Gene position: 913304-914479 (Clockwise)
Preceding gene: 17545594
Following gene: 17545596
Centisome position: 24.57
GC content: 67.26
Gene sequence:
>1176_bases TTGATCTCCATGACCATCAAGTATTTCCAGTCCAACCAGACCGGTGCACCGCAGCTGAGCGGCCAGCGCGGGACCCTGAT CGCCGTGCTCAACGCCTGTCTCGGCAACGGCTTCAACCTGCGCACGCTGACCGCGCTCACCCGCGACGGCACGATGGCGA CCGCCACGGCGGACGCTGGGCACGGCTTCCGCGAGAACGACATCGTGCTGATCGCGGGGGCCAACGAGGCGGCCTACAAC GGCGAGCACCGCATCCGCAATGTGACCACCAACACGTTCCAGTTCGATATTGCGGCCGACGCGGCCGCGCGCGCCACCGG GATCCTGACCGCGAAGATCGCGCCGCTGGGGTGGGAGATGCCGTTCTCGGGGGAGGACCGCGCGGTCTACCGGTCGCGCG ACGTGACCAGCAATCGCCTGTTCCTGCGCATCGACGAGACGCCGCTCGCGGGCGACGGCAACTACGGGCGCGGCCCGCGC ACGGTGCTGGCACAGATGTGGGAAGTGCTCAACGACGTCGACAACGGCACGGGCCGGGCAGAGACGATGTGGCGCAAGGC GCAGAACGACAACGCGACCACGCGCCCCTGGGTGCTGGTGGGCGACAGCAAACGCTTCTGGCTGGCGGTGAACTGGAGCG AGAGCTACCCGAACCGCTACGCGCCGTACTTCTTTGGCGACTACCCATCCTTCAAGGCGGGCGATGCCTACGACACGATG GTCGCTGGCTACTACGACCTGAACATCAATTGGGCCGAACCTTCCAGCAACCTCGTCACGGACAACGTCTACTCGGTCGG AACGGGGGTCGGTAACACGGGCATCTGGCTGGCGCGCGGGTATTCGCAGCTGGGTGGCCGCATCAACGCGCAATGGGTCA GTGCCCCGGCGGGCGGTGGTAGCACGGGCCTGGGGGCTACCGCTGTGCCGTACCCGAACCCGGCGGACAACGGCATCTAC GTGATGCCACTGATGATTCAGGAGCAGACCGGGCCGTCGCTGCGCGGCCGGCTGCCGGGCTTGCTGTGTCCGCTGCAGTC GATTCCCGCGCCGGAGCCCTGGAAGTTTCCCGGCTTCGTGATCGATGGAACGCAGCGCGAGCTGCTGGTGGTGGGCGGCG CAGCCAGCAACGGCAACGCGCGGCTGGCCTTCGATCTGACCGGCCCCTGGGATTGA
Upstream 100 bases:
>100_bases ACTTCCCTGTGTGGATCGCGCGCACAACGCTGCAGGGACCTGCCACGCAGACAAACGACGCCTTCCAGATCCAGATTCGC GGCGACATCGATCGCTGACT
Downstream 100 bases:
>100_bases TCCATGGCCGGTGAAATCCCGAGGGTCGTTGGTGCGGCCAGCCGGGTCTTTCCAGGCGCGGTCGCGGGCGCACCCACACA GCGGGTGCTGTACAACGAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MISMTIKYFQSNQTGAPQLSGQRGTLIAVLNACLGNGFNLRTLTALTRDGTMATATADAGHGFRENDIVLIAGANEAAYN GEHRIRNVTTNTFQFDIAADAAARATGILTAKIAPLGWEMPFSGEDRAVYRSRDVTSNRLFLRIDETPLAGDGNYGRGPR TVLAQMWEVLNDVDNGTGRAETMWRKAQNDNATTRPWVLVGDSKRFWLAVNWSESYPNRYAPYFFGDYPSFKAGDAYDTM VAGYYDLNINWAEPSSNLVTDNVYSVGTGVGNTGIWLARGYSQLGGRINAQWVSAPAGGGSTGLGATAVPYPNPADNGIY VMPLMIQEQTGPSLRGRLPGLLCPLQSIPAPEPWKFPGFVIDGTQRELLVVGGAASNGNARLAFDLTGPWD
Sequences:
>Translated_391_residues MISMTIKYFQSNQTGAPQLSGQRGTLIAVLNACLGNGFNLRTLTALTRDGTMATATADAGHGFRENDIVLIAGANEAAYN GEHRIRNVTTNTFQFDIAADAAARATGILTAKIAPLGWEMPFSGEDRAVYRSRDVTSNRLFLRIDETPLAGDGNYGRGPR TVLAQMWEVLNDVDNGTGRAETMWRKAQNDNATTRPWVLVGDSKRFWLAVNWSESYPNRYAPYFFGDYPSFKAGDAYDTM VAGYYDLNINWAEPSSNLVTDNVYSVGTGVGNTGIWLARGYSQLGGRINAQWVSAPAGGGSTGLGATAVPYPNPADNGIY VMPLMIQEQTGPSLRGRLPGLLCPLQSIPAPEPWKFPGFVIDGTQRELLVVGGAASNGNARLAFDLTGPWD >Mature_391_residues MISMTIKYFQSNQTGAPQLSGQRGTLIAVLNACLGNGFNLRTLTALTRDGTMATATADAGHGFRENDIVLIAGANEAAYN GEHRIRNVTTNTFQFDIAADAAARATGILTAKIAPLGWEMPFSGEDRAVYRSRDVTSNRLFLRIDETPLAGDGNYGRGPR TVLAQMWEVLNDVDNGTGRAETMWRKAQNDNATTRPWVLVGDSKRFWLAVNWSESYPNRYAPYFFGDYPSFKAGDAYDTM VAGYYDLNINWAEPSSNLVTDNVYSVGTGVGNTGIWLARGYSQLGGRINAQWVSAPAGGGSTGLGATAVPYPNPADNGIY VMPLMIQEQTGPSLRGRLPGLLCPLQSIPAPEPWKFPGFVIDGTQRELLVVGGAASNGNARLAFDLTGPWD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42209; Mature: 42209
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISMTIKYFQSNQTGAPQLSGQRGTLIAVLNACLGNGFNLRTLTALTRDGTMATATADAG CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCC HGFRENDIVLIAGANEAAYNGEHRIRNVTTNTFQFDIAADAAARATGILTAKIAPLGWEM CCCCCCCEEEEECCCCHHCCCCCEEEEEECCEEEEEEECCCHHHHEEEEEEEECCCCCCC PFSGEDRAVYRSRDVTSNRLFLRIDETPLAGDGNYGRGPRTVLAQMWEVLNDVDNGTGRA CCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH ETMWRKAQNDNATTRPWVLVGDSKRFWLAVNWSESYPNRYAPYFFGDYPSFKAGDAYDTM HHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEE VAGYYDLNINWAEPSSNLVTDNVYSVGTGVGNTGIWLARGYSQLGGRINAQWVSAPAGGG EEEEEEEEEEECCCCCCEEECCEEEECCCCCCCCEEEECCHHHHCCEEEEEEEECCCCCC STGLGATAVPYPNPADNGIYVMPLMIQEQTGPSLRGRLPGLLCPLQSIPAPEPWKFPGFV CCCCCCEECCCCCCCCCCEEEEEEEEECCCCCCHHCCCCCEECCHHHCCCCCCCCCCCEE IDGTQRELLVVGGAASNGNARLAFDLTGPWD EECCCCEEEEEECCCCCCCEEEEEEECCCCC >Mature Secondary Structure MISMTIKYFQSNQTGAPQLSGQRGTLIAVLNACLGNGFNLRTLTALTRDGTMATATADAG CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCC HGFRENDIVLIAGANEAAYNGEHRIRNVTTNTFQFDIAADAAARATGILTAKIAPLGWEM CCCCCCCEEEEECCCCHHCCCCCEEEEEECCEEEEEEECCCHHHHEEEEEEEECCCCCCC PFSGEDRAVYRSRDVTSNRLFLRIDETPLAGDGNYGRGPRTVLAQMWEVLNDVDNGTGRA CCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH ETMWRKAQNDNATTRPWVLVGDSKRFWLAVNWSESYPNRYAPYFFGDYPSFKAGDAYDTM HHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEE VAGYYDLNINWAEPSSNLVTDNVYSVGTGVGNTGIWLARGYSQLGGRINAQWVSAPAGGG EEEEEEEEEEECCCCCCEEECCEEEECCCCCCCCEEEECCHHHHCCEEEEEEEECCCCCC STGLGATAVPYPNPADNGIYVMPLMIQEQTGPSLRGRLPGLLCPLQSIPAPEPWKFPGFV CCCCCCEECCCCCCCCCCEEEEEEEEECCCCCCHHCCCCCEECCHHHCCCCCCCCCCCEE IDGTQRELLVVGGAASNGNARLAFDLTGPWD EECCCCEEEEEECCCCCCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA