Definition | Nostoc sp. PCC 7120, complete genome. |
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Accession | NC_003272 |
Length | 6,413,771 |
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The map label for this gene is 17230980
Identifier: 17230980
GI number: 17230980
Start: 4203144
End: 4204019
Strand: Reverse
Name: 17230980
Synonym: all3488
Alternate gene names: NA
Gene position: 4204019-4203144 (Counterclockwise)
Preceding gene: 17230981
Following gene: 17230979
Centisome position: 65.55
GC content: 34.59
Gene sequence:
>876_bases ATGACTCAAGGAAAATGGCTAAGAAAGCCAAGTAAAGAAAAAGGCGTAGTTATAATATTTATTCATGGACTAAATTCTAG TGATGATTGTTGGAGAAATGAAAATGGACTGTACTGGTTCATATTACTTCTAATTGAAGATGAATTGGCAGAGATTGGGA TTTATATATTTTCCTATCGTACTGGTTTGAATACGGGTTCTTATAGCTTAAGTGATGTTGTTGATTCTCTCAGAGAATAC TTCCTACTGGATGGTTTAATTAATAGTGCAGCAGTTATATTTGTTTGTCATAGCATGGGAGGGATTGTAACAAGGCGGTT TCTCGTCAACCAATATTCACTGCTAGTTGAAAGAGGTCTGAACAAGATTGGTTTGTTTTTAGTAGCATCACCATCTTTGG GTTCTAAATATGCAAATATGCTAGGACTTTTATCAAGTATTATGGGTCATACTCAAGCTAGCGCACTGAGATTTTCTCAA AGTAATGTGTGGCTCAATGATTTAGATAAGGATTTTCTCAATCTCATAAACAACAAGAACTTAAGAATTAAAGGGAAAGA GCTAATTGAAGATTTGCCGCTATATGGAAAAGGAATTCTCAAGAAGCAGATTGTTGAACCTTTCTCTGGTGCAAGATATT TTGGTCGAGCGTTCAAAGTTCCAGGTTCAGATCACATTACAATCAGTAAACCGAAGGATAAATACGCTGTACAACACCGT TTACTAGTTCAATTTATCAAGGAATTTTTGCTAGAGGAATTTGGTTTTCTAAAATTCGATGATTCTTTTGTGGGGTATTT GAAATCGATTGCTTATCGGATTCTTGATGAACGTAAGATTGATTTAAATGAACTTCTCAAAAGAATAATCAGATGA
Upstream 100 bases:
>100_bases AAAGGTTTCGTTTTGCACACACAAATATGTTTATTTTTGTTCTCTCCTTAATTGGGAAAGTTCTATTTTTCATCGCTCAT ACTGCAAAGGTCGCAAACTT
Downstream 100 bases:
>100_bases TGTCTAAAAAAAAATATAATAAAAGAAAGCCACCAAGATTTTAATTTGGTGGCTTTTTTATAGAAGGTGTTTATCAAGGA CGTTCTGTTATTAACTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MTQGKWLRKPSKEKGVVIIFIHGLNSSDDCWRNENGLYWFILLLIEDELAEIGIYIFSYRTGLNTGSYSLSDVVDSLREY FLLDGLINSAAVIFVCHSMGGIVTRRFLVNQYSLLVERGLNKIGLFLVASPSLGSKYANMLGLLSSIMGHTQASALRFSQ SNVWLNDLDKDFLNLINNKNLRIKGKELIEDLPLYGKGILKKQIVEPFSGARYFGRAFKVPGSDHITISKPKDKYAVQHR LLVQFIKEFLLEEFGFLKFDDSFVGYLKSIAYRILDERKIDLNELLKRIIR
Sequences:
>Translated_291_residues MTQGKWLRKPSKEKGVVIIFIHGLNSSDDCWRNENGLYWFILLLIEDELAEIGIYIFSYRTGLNTGSYSLSDVVDSLREY FLLDGLINSAAVIFVCHSMGGIVTRRFLVNQYSLLVERGLNKIGLFLVASPSLGSKYANMLGLLSSIMGHTQASALRFSQ SNVWLNDLDKDFLNLINNKNLRIKGKELIEDLPLYGKGILKKQIVEPFSGARYFGRAFKVPGSDHITISKPKDKYAVQHR LLVQFIKEFLLEEFGFLKFDDSFVGYLKSIAYRILDERKIDLNELLKRIIR >Mature_290_residues TQGKWLRKPSKEKGVVIIFIHGLNSSDDCWRNENGLYWFILLLIEDELAEIGIYIFSYRTGLNTGSYSLSDVVDSLREYF LLDGLINSAAVIFVCHSMGGIVTRRFLVNQYSLLVERGLNKIGLFLVASPSLGSKYANMLGLLSSIMGHTQASALRFSQS NVWLNDLDKDFLNLINNKNLRIKGKELIEDLPLYGKGILKKQIVEPFSGARYFGRAFKVPGSDHITISKPKDKYAVQHRL LVQFIKEFLLEEFGFLKFDDSFVGYLKSIAYRILDERKIDLNELLKRIIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33260; Mature: 33129
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQGKWLRKPSKEKGVVIIFIHGLNSSDDCWRNENGLYWFILLLIEDELAEIGIYIFSYR CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHEEEEEEE TGLNTGSYSLSDVVDSLREYFLLDGLINSAAVIFVCHSMGGIVTRRFLVNQYSLLVERGL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NKIGLFLVASPSLGSKYANMLGLLSSIMGHTQASALRFSQSNVWLNDLDKDFLNLINNKN CCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHEECCCCCCHHHHHHHHHHHHCCCC LRIKGKELIEDLPLYGKGILKKQIVEPFSGARYFGRAFKVPGSDHITISKPKDKYAVQHR EEEEHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHEEECCCCCCEEEECCCHHHHHHHH LLVQFIKEFLLEEFGFLKFDDSFVGYLKSIAYRILDERKIDLNELLKRIIR HHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC >Mature Secondary Structure TQGKWLRKPSKEKGVVIIFIHGLNSSDDCWRNENGLYWFILLLIEDELAEIGIYIFSYR CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHEEEEEEE TGLNTGSYSLSDVVDSLREYFLLDGLINSAAVIFVCHSMGGIVTRRFLVNQYSLLVERGL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NKIGLFLVASPSLGSKYANMLGLLSSIMGHTQASALRFSQSNVWLNDLDKDFLNLINNKN CCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHEECCCCCCHHHHHHHHHHHHCCCC LRIKGKELIEDLPLYGKGILKKQIVEPFSGARYFGRAFKVPGSDHITISKPKDKYAVQHR EEEEHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHEEECCCCCCEEEECCCHHHHHHHH LLVQFIKEFLLEEFGFLKFDDSFVGYLKSIAYRILDERKIDLNELLKRIIR HHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA