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The map label for this gene is pds [H]

Identifier: 17230277

GI number: 17230277

Start: 3384469

End: 3386418

Strand: Direct

Name: pds [H]

Synonym: alr2785

Alternate gene names: 17230277

Gene position: 3384469-3386418 (Clockwise)

Preceding gene: 17230276

Following gene: 17230282

Centisome position: 52.77

GC content: 40.05

Gene sequence:

>1950_bases
ATGAGTTTATTATCTAATTTGCCAGAGTCTACTAATATATCCCATATATCCCGTCGCACCCTTTTAAAGGTGTTTGGTGT
TGGTGCAGTCGCAGGAGTAACAGGATACTCTCGGTTTACCAAGCCCAAGCCAACGGTATTTCAAAAAGATACCTTGAGTT
TGCCACGGTTACTGAATCAAGCAAAAAGTGTCATAGTTATCGGGGGTGGTTTAGCGGGTTTAGCTTGTGCGTATGAATTG
AGTCAACGGGGGTTTACAGTCACACTGATAGAAAAATCACCCCAACTCGGTGGTAAAATTGCTAGCTGGCAAATAGAAGC
CGTGGGCGAAACCTTCATGATGGAACATGGCTTTCATGGCTTTTTTCCCCAGTACTATAATTTGAAAAGTATAGTTGCAG
AACTGGGAATAAATGAGAATTTCCAATCATTAAACTTTTATTCAGTTGTCTATCGAGGAGATCAATACAAACCAGAGGTT
TTTCGTCCCAGTCATTCAGCATTTCCTTGGAATATTGTAGACTTAGCGATCGCCTCTCCTAATCGCTTCCAATGGGGAAT
TAATTTAACGAAGATTAAACACCTACAAGTATTTCAAGCCATCACAGGTTTTCAGCGAGAAAAGAATTATCAACGCTTTG
ATAATATATCCGTGGCTGATTGGGTGAAAACGGAATTTCCCCAAGGTTTATATGATTTGTATTTTCTCCCATTTGCTAAG
TCTAGCTTGAACGCACCAGATACGATGAGTGTGGGAGAATTAATGCAATTCTTCCATTTTTATTTTTTTGGCAATCCAGA
AGGACTGGCTTTTAATGGTACGAAAGATGATATGGGGACAAGTTTAGTCCAACCCATTGCCAAGAGTGTGAAAAATAAGA
GTGGGACAATTATCACTGATGCTACGGTGAGTGAAATTATTGCCAAGGATGGTAAAATTCAAGGCTTGAAATATTATGTT
GGCAATAATCAAAATAATGCCCCTTTTTGGGTAAAACGTAACTCAGTTATTACTGAAGAAAAAACAGAATATTTTGGTGC
TGCTGATGAAGTATTTGCTGTAGAATCTGGTAGCGAAACAGCAATTTCTCTCACTTGTACTCATCAAGGTTGTACTGTGA
AAAAATCCACAGATGGTAAATACCGTTGCCCTTGTCATGGGGCTGAGTTTGCGGCTGATGGTAAAGTGTTGAAGGGGCCA
GCCAAGCGGGATTTACAAAAGTTGCAGGTTGTACAAAAACAAAATGATGAATTGCAACTGCTAGCTACAACCAATGATGC
ACCCTTACCAGAGACAATCACCGCAGATTATTACGTGTTTGCTACCGATGTACCTGGAGTGCAACAATTATTTAAGCATA
TTAGTGGTGATGTAGATCAAACAGTGCGATCGCAAGTGGAAAACTTGAGTATCGCTGATCCTTTTGCTGTGTGTCGTTTC
TGGTTTGATCAAGATTTTGAGTGGGAACAAAGTAACTTTACTTCCTTATCTGGCTATCAGTTAACCGACAGCATCACCTT
ATATCACCGCATTCAGCAACAATTTATTGATTGGTCAAAAAAGACTGGTGGTAGTGTAGTGGAGTTACACGCCTATTGTT
ACAAAGAAAAAGAATTTCCCACCCAAGAAGCTTTGTTAACTACCTTTGAAAACGAATTATATGAGATAGTCCCCCAGTTG
AAGCAAGCAAAACTCCTGCATCGGGAATTAGTGAATCAACATAACTTTTCTGGCTATCCACCAAATAGTTATGGAGAACG
TCCAGAAACCAGTACAAACATTTCTAACTTATTATTTGCTGGTGATTGGGTAAAAATGCCTTTTCCCTGCGGCTTAATGG
AACGCGCCGTCAGTAGTGGTTTAATCGCAGCTAATGAGATTTTACACCGAGAAGGTTTGCAGAGGCGATCGCTTTTATCG
GTGAATCCAGAGGGTTTGTTGCAGATTTAA

Upstream 100 bases:

>100_bases
AACTGTCAACGTGAAATCCTATACCCTTTTAGGGATGGGATGAGCTTAAAGTTATAGATTTACGTCAGTATTTCATTGTG
AAGAGTTAATTTTATCACCA

Downstream 100 bases:

>100_bases
GGATTATAGATACCCGACTTTTTCAAAAAGTCGGGTATCTGCATCTTTTGTAGATCCCTAAGCAATATCATTCTTGCTCT
AAAATTCTTTCTATATCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 649; Mature: 648

Protein sequence:

>649_residues
MSLLSNLPESTNISHISRRTLLKVFGVGAVAGVTGYSRFTKPKPTVFQKDTLSLPRLLNQAKSVIVIGGGLAGLACAYEL
SQRGFTVTLIEKSPQLGGKIASWQIEAVGETFMMEHGFHGFFPQYYNLKSIVAELGINENFQSLNFYSVVYRGDQYKPEV
FRPSHSAFPWNIVDLAIASPNRFQWGINLTKIKHLQVFQAITGFQREKNYQRFDNISVADWVKTEFPQGLYDLYFLPFAK
SSLNAPDTMSVGELMQFFHFYFFGNPEGLAFNGTKDDMGTSLVQPIAKSVKNKSGTIITDATVSEIIAKDGKIQGLKYYV
GNNQNNAPFWVKRNSVITEEKTEYFGAADEVFAVESGSETAISLTCTHQGCTVKKSTDGKYRCPCHGAEFAADGKVLKGP
AKRDLQKLQVVQKQNDELQLLATTNDAPLPETITADYYVFATDVPGVQQLFKHISGDVDQTVRSQVENLSIADPFAVCRF
WFDQDFEWEQSNFTSLSGYQLTDSITLYHRIQQQFIDWSKKTGGSVVELHAYCYKEKEFPTQEALLTTFENELYEIVPQL
KQAKLLHRELVNQHNFSGYPPNSYGERPETSTNISNLLFAGDWVKMPFPCGLMERAVSSGLIAANEILHREGLQRRSLLS
VNPEGLLQI

Sequences:

>Translated_649_residues
MSLLSNLPESTNISHISRRTLLKVFGVGAVAGVTGYSRFTKPKPTVFQKDTLSLPRLLNQAKSVIVIGGGLAGLACAYEL
SQRGFTVTLIEKSPQLGGKIASWQIEAVGETFMMEHGFHGFFPQYYNLKSIVAELGINENFQSLNFYSVVYRGDQYKPEV
FRPSHSAFPWNIVDLAIASPNRFQWGINLTKIKHLQVFQAITGFQREKNYQRFDNISVADWVKTEFPQGLYDLYFLPFAK
SSLNAPDTMSVGELMQFFHFYFFGNPEGLAFNGTKDDMGTSLVQPIAKSVKNKSGTIITDATVSEIIAKDGKIQGLKYYV
GNNQNNAPFWVKRNSVITEEKTEYFGAADEVFAVESGSETAISLTCTHQGCTVKKSTDGKYRCPCHGAEFAADGKVLKGP
AKRDLQKLQVVQKQNDELQLLATTNDAPLPETITADYYVFATDVPGVQQLFKHISGDVDQTVRSQVENLSIADPFAVCRF
WFDQDFEWEQSNFTSLSGYQLTDSITLYHRIQQQFIDWSKKTGGSVVELHAYCYKEKEFPTQEALLTTFENELYEIVPQL
KQAKLLHRELVNQHNFSGYPPNSYGERPETSTNISNLLFAGDWVKMPFPCGLMERAVSSGLIAANEILHREGLQRRSLLS
VNPEGLLQI
>Mature_648_residues
SLLSNLPESTNISHISRRTLLKVFGVGAVAGVTGYSRFTKPKPTVFQKDTLSLPRLLNQAKSVIVIGGGLAGLACAYELS
QRGFTVTLIEKSPQLGGKIASWQIEAVGETFMMEHGFHGFFPQYYNLKSIVAELGINENFQSLNFYSVVYRGDQYKPEVF
RPSHSAFPWNIVDLAIASPNRFQWGINLTKIKHLQVFQAITGFQREKNYQRFDNISVADWVKTEFPQGLYDLYFLPFAKS
SLNAPDTMSVGELMQFFHFYFFGNPEGLAFNGTKDDMGTSLVQPIAKSVKNKSGTIITDATVSEIIAKDGKIQGLKYYVG
NNQNNAPFWVKRNSVITEEKTEYFGAADEVFAVESGSETAISLTCTHQGCTVKKSTDGKYRCPCHGAEFAADGKVLKGPA
KRDLQKLQVVQKQNDELQLLATTNDAPLPETITADYYVFATDVPGVQQLFKHISGDVDQTVRSQVENLSIADPFAVCRFW
FDQDFEWEQSNFTSLSGYQLTDSITLYHRIQQQFIDWSKKTGGSVVELHAYCYKEKEFPTQEALLTTFENELYEIVPQLK
QAKLLHRELVNQHNFSGYPPNSYGERPETSTNISNLLFAGDWVKMPFPCGLMERAVSSGLIAANEILHREGLQRRSLLSV
NPEGLLQI

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001613
- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 72787; Mature: 72656

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLSNLPESTNISHISRRTLLKVFGVGAVAGVTGYSRFTKPKPTVFQKDTLSLPRLLNQ
CCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCHHHCCCCCCCEECCHHHHHHHHHHH
AKSVIVIGGGLAGLACAYELSQRGFTVTLIEKSPQLGGKIASWQIEAVGETFMMEHGFHG
CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEHHCHHHHHHCCCCC
FFPQYYNLKSIVAELGINENFQSLNFYSVVYRGDQYKPEVFRPSHSAFPWNIVDLAIASP
CCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECC
NRFQWGINLTKIKHLQVFQAITGFQREKNYQRFDNISVADWVKTEFPQGLYDLYFLPFAK
CCEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCHHHHHHHCCHH
SSLNAPDTMSVGELMQFFHFYFFGNPEGLAFNGTKDDMGTSLVQPIAKSVKNKSGTIITD
CCCCCCCCCCHHHHHHHHHHHEECCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEC
ATVSEIIAKDGKIQGLKYYVGNNQNNAPFWVKRNSVITEEKTEYFGAADEVFAVESGSET
HHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCEECCHHHHHCCCCCCEEEEECCCCE
AISLTCTHQGCTVKKSTDGKYRCPCHGAEFAADGKVLKGPAKRDLQKLQVVQKQNDELQL
EEEEEEECCCCEEEECCCCCEECCCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEE
LATTNDAPLPETITADYYVFATDVPGVQQLFKHISGDVDQTVRSQVENLSIADPFAVCRF
EEECCCCCCCCEECCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHH
WFDQDFEWEQSNFTSLSGYQLTDSITLYHRIQQQFIDWSKKTGGSVVELHAYCYKEKEFP
HHCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCC
TQEALLTTFENELYEIVPQLKQAKLLHRELVNQHNFSGYPPNSYGERPETSTNISNLLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHEEEE
GDWVKMPFPCGLMERAVSSGLIAANEILHREGLQRRSLLSVNPEGLLQI
CCCEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCCCEEC
>Mature Secondary Structure 
SLLSNLPESTNISHISRRTLLKVFGVGAVAGVTGYSRFTKPKPTVFQKDTLSLPRLLNQ
CHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCHHHCCCCCCCEECCHHHHHHHHHHH
AKSVIVIGGGLAGLACAYELSQRGFTVTLIEKSPQLGGKIASWQIEAVGETFMMEHGFHG
CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEHHCHHHHHHCCCCC
FFPQYYNLKSIVAELGINENFQSLNFYSVVYRGDQYKPEVFRPSHSAFPWNIVDLAIASP
CCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECC
NRFQWGINLTKIKHLQVFQAITGFQREKNYQRFDNISVADWVKTEFPQGLYDLYFLPFAK
CCEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCHHHHHHHCCHH
SSLNAPDTMSVGELMQFFHFYFFGNPEGLAFNGTKDDMGTSLVQPIAKSVKNKSGTIITD
CCCCCCCCCCHHHHHHHHHHHEECCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEC
ATVSEIIAKDGKIQGLKYYVGNNQNNAPFWVKRNSVITEEKTEYFGAADEVFAVESGSET
HHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCEECCHHHHHCCCCCCEEEEECCCCE
AISLTCTHQGCTVKKSTDGKYRCPCHGAEFAADGKVLKGPAKRDLQKLQVVQKQNDELQL
EEEEEEECCCCEEEECCCCCEECCCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEE
LATTNDAPLPETITADYYVFATDVPGVQQLFKHISGDVDQTVRSQVENLSIADPFAVCRF
EEECCCCCCCCEECCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHH
WFDQDFEWEQSNFTSLSGYQLTDSITLYHRIQQQFIDWSKKTGGSVVELHAYCYKEKEFP
HHCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCC
TQEALLTTFENELYEIVPQLKQAKLLHRELVNQHNFSGYPPNSYGERPETSTNISNLLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHEEEE
GDWVKMPFPCGLMERAVSSGLIAANEILHREGLQRRSLLSVNPEGLLQI
CCCEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1581575; 8905231 [H]