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The map label for this gene is ugpB [C]

Identifier: 17230214

GI number: 17230214

Start: 3317719

End: 3319017

Strand: Direct

Name: ugpB [C]

Synonym: alr2722

Alternate gene names: 17230214

Gene position: 3317719-3319017 (Clockwise)

Preceding gene: 17230211

Following gene: 17230215

Centisome position: 51.73

GC content: 40.42

Gene sequence:

>1299_bases
ATGATAAGTATTATTTTTTTATCCAGAATAATTCAACATTTTAACTTAGCTACACGCTATTTATTAATAGCATTAACTCT
GACTATGTGTCTGATATTATCAGCTTGCCAATCAACAATACAGGCACAATCAAGTATTATCAATCTTACCCTTTGGCATG
GGATTAATCCCCCCAGTAATCGAGATGTATTTCAACAACTAGTAGACAAATTTAATCAAACTCATCCAGATATCCACATA
GAATCTCTCTATGCAGGTCAGCTTGAACAACAAATACCCAAAGTTTTAACCGCAGTTGTGGGTAATGTACCACCAGATAT
TTTGTTTTTCAACCCGCAAATCACTGGTCAATTGGTAGACTTGGCAGCTATTCGACCTTTGGAAGAATGGCTAGATAAAT
CTCCCCTCAAGGCAGAAATTATTCCTAATTGCTTTGGGGAAATGGAGTTAGATGGTCATATTTGGTCAGTCCCTCTTTTT
GCTGGGAATGTGGGGATTTTTTATAGACCGGATTTATTTAAAGCGGCGGGAATTACCGAATTACCCAGGACTTGGGAAGA
ACTCAGACAAGTTGCTAAAAAACTCACCATAGACCGTAATGGCGATCGCATTCCCGATCAGTATGGTATGCTCATGCCCT
TGGGTAAAGGGGAATGGACGGTTTTTACATGGTTTCCCTTCTTATTGAGTAGTGATGGGACAATAGTAGAAAATAATCAT
CCTAGTTTAATCAATCCAGGGGCGATCGCTGCTTTACAATTTTGGCAAAACCTCATTCAAGACGGTTCAGCCAAGTTATC
TGCACCAGAACGGGGATACGAAGAAGATGATTTTGTGGCTGGTCGTGTGGCGATGCAGCTAACAGGGCCTTGGACATCTA
TTATGAAAAGTCAAGTTGATTTTGATGTCCTACCAATTCCTATTAACCTTCATCCTGCCAGTGTCCTCGCCAGTGGCAAT
ATGTTTGTGATGAAAACCACACCACAAAAAGAACAAGCAGCTTGGAAGTTTTTAGAATACATTCTCAGTGAGCAATTCCA
AACAGAGTGGAGTATTGGTTCAGGTTTTTTGCCAGTAAATTTAAAATCTATTCAAAGCCCAGCTTATCAAGAAGCTATCC
GACAAAAACCGGCGCTGCAAGTTTTTCTGGAGCAAATGGCTGTATCTGGTTCCCGTCCAATTATTTCTGGGTATAGTCGT
CTATCAGAAAGTTTGGGTAGAGCAATTGAGGCGACAATGTTGGGTGCATCTCCAGAAAGCGCATTGAAAAAAGCCCAAGC
ACACCTAGATCTTTTTTGA

Upstream 100 bases:

>100_bases
TGATGTAAAAGGATATAATACTACGAATATTTAAAATAAACACATCATCAAAAATTGAGTAAAACCCGTGAGAAAACCTT
AATTACTCTAATCAATTGCT

Downstream 100 bases:

>100_bases
ATTGTTATTCATCATTAGTCAACTGTCAATACTAAAACAGATGCGGGTTTAGATGCACACATCTGATTGACAAACTGGTA
TAAATCTTTCCTATGGGCTA

Product: periplasmic sugar-binding protein of sugar ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MISIIFLSRIIQHFNLATRYLLIALTLTMCLILSACQSTIQAQSSIINLTLWHGINPPSNRDVFQQLVDKFNQTHPDIHI
ESLYAGQLEQQIPKVLTAVVGNVPPDILFFNPQITGQLVDLAAIRPLEEWLDKSPLKAEIIPNCFGEMELDGHIWSVPLF
AGNVGIFYRPDLFKAAGITELPRTWEELRQVAKKLTIDRNGDRIPDQYGMLMPLGKGEWTVFTWFPFLLSSDGTIVENNH
PSLINPGAIAALQFWQNLIQDGSAKLSAPERGYEEDDFVAGRVAMQLTGPWTSIMKSQVDFDVLPIPINLHPASVLASGN
MFVMKTTPQKEQAAWKFLEYILSEQFQTEWSIGSGFLPVNLKSIQSPAYQEAIRQKPALQVFLEQMAVSGSRPIISGYSR
LSESLGRAIEATMLGASPESALKKAQAHLDLF

Sequences:

>Translated_432_residues
MISIIFLSRIIQHFNLATRYLLIALTLTMCLILSACQSTIQAQSSIINLTLWHGINPPSNRDVFQQLVDKFNQTHPDIHI
ESLYAGQLEQQIPKVLTAVVGNVPPDILFFNPQITGQLVDLAAIRPLEEWLDKSPLKAEIIPNCFGEMELDGHIWSVPLF
AGNVGIFYRPDLFKAAGITELPRTWEELRQVAKKLTIDRNGDRIPDQYGMLMPLGKGEWTVFTWFPFLLSSDGTIVENNH
PSLINPGAIAALQFWQNLIQDGSAKLSAPERGYEEDDFVAGRVAMQLTGPWTSIMKSQVDFDVLPIPINLHPASVLASGN
MFVMKTTPQKEQAAWKFLEYILSEQFQTEWSIGSGFLPVNLKSIQSPAYQEAIRQKPALQVFLEQMAVSGSRPIISGYSR
LSESLGRAIEATMLGASPESALKKAQAHLDLF
>Mature_432_residues
MISIIFLSRIIQHFNLATRYLLIALTLTMCLILSACQSTIQAQSSIINLTLWHGINPPSNRDVFQQLVDKFNQTHPDIHI
ESLYAGQLEQQIPKVLTAVVGNVPPDILFFNPQITGQLVDLAAIRPLEEWLDKSPLKAEIIPNCFGEMELDGHIWSVPLF
AGNVGIFYRPDLFKAAGITELPRTWEELRQVAKKLTIDRNGDRIPDQYGMLMPLGKGEWTVFTWFPFLLSSDGTIVENNH
PSLINPGAIAALQFWQNLIQDGSAKLSAPERGYEEDDFVAGRVAMQLTGPWTSIMKSQVDFDVLPIPINLHPASVLASGN
MFVMKTTPQKEQAAWKFLEYILSEQFQTEWSIGSGFLPVNLKSIQSPAYQEAIRQKPALQVFLEQMAVSGSRPIISGYSR
LSESLGRAIEATMLGASPESALKKAQAHLDLF

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48186; Mature: 48186

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISIIFLSRIIQHFNLATRYLLIALTLTMCLILSACQSTIQAQSSIINLTLWHGINPPSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCC
RDVFQQLVDKFNQTHPDIHIESLYAGQLEQQIPKVLTAVVGNVPPDILFFNPQITGQLVD
HHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHH
LAAIRPLEEWLDKSPLKAEIIPNCFGEMELDGHIWSVPLFAGNVGIFYRPDLFKAAGITE
HHHHHHHHHHHCCCCCCCHHCCCCCCCEEECCEEEEEEEEECCCCEEECCCHHHHCCCCH
LPRTWEELRQVAKKLTIDRNGDRIPDQYGMLMPLGKGEWTVFTWFPFLLSSDGTIVENNH
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEHHHHCCCCCEEECCC
PSLINPGAIAALQFWQNLIQDGSAKLSAPERGYEEDDFVAGRVAMQLTGPWTSIMKSQVD
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHCCC
FDVLPIPINLHPASVLASGNMFVMKTTPQKEQAAWKFLEYILSEQFQTEWSIGSGFLPVN
CEEEEEEECCCHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
LKSIQSPAYQEAIRQKPALQVFLEQMAVSGSRPIISGYSRLSESLGRAIEATMLGASPES
HHHHCCHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
ALKKAQAHLDLF
HHHHHHHHCCCC
>Mature Secondary Structure
MISIIFLSRIIQHFNLATRYLLIALTLTMCLILSACQSTIQAQSSIINLTLWHGINPPSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCC
RDVFQQLVDKFNQTHPDIHIESLYAGQLEQQIPKVLTAVVGNVPPDILFFNPQITGQLVD
HHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHH
LAAIRPLEEWLDKSPLKAEIIPNCFGEMELDGHIWSVPLFAGNVGIFYRPDLFKAAGITE
HHHHHHHHHHHCCCCCCCHHCCCCCCCEEECCEEEEEEEEECCCCEEECCCHHHHCCCCH
LPRTWEELRQVAKKLTIDRNGDRIPDQYGMLMPLGKGEWTVFTWFPFLLSSDGTIVENNH
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEHHHHCCCCCEEECCC
PSLINPGAIAALQFWQNLIQDGSAKLSAPERGYEEDDFVAGRVAMQLTGPWTSIMKSQVD
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHCCC
FDVLPIPINLHPASVLASGNMFVMKTTPQKEQAAWKFLEYILSEQFQTEWSIGSGFLPVN
CEEEEEEECCCHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
LKSIQSPAYQEAIRQKPALQVFLEQMAVSGSRPIISGYSRLSESLGRAIEATMLGASPES
HHHHCCHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
ALKKAQAHLDLF
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA