Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 17230211

GI number: 17230211

Start: 3314279

End: 3315637

Strand: Direct

Name: ydcM [C]

Synonym: alr2719

Alternate gene names: 17230211

Gene position: 3314279-3315637 (Clockwise)

Preceding gene: 17230210

Following gene: 17230214

Centisome position: 51.67

GC content: 43.12

Gene sequence:

>1359_bases
GTGTTGCACAAGGTTGTACAAGTTCGTTTATACCCATCAATTGAGCAGAAAGTTCAGTTAGCTCAAGCTTTTGGTTGCTC
TCGTTGGTGGTGGAATTACGCTCTAAATAAATCAATTGAGACTTATAAAGAAACGGGCAAAGGACTTACACGTGCAGCAC
TCAACGCACTACTTCCTAATCTCAAAAAAGCAGAAGATACTTGTTGGTTAGCTGACTGTTATAGCCAAGTTTTACAAGCT
ACAACACTGAATCTAACCACAGCGTACAAGAACTTTTTTGAGAAACGTGCTGGCTTTCCTAAGTTCAAATCCAAGCATGG
CAAGCAGTCAATTCAGTATCCTCAAAACGTCAAAATTGTAGATGGTGAGTCCAGTCCTGTTCGCGCAGCGTCCCGTAGGG
AAGGAGGGTTTCCCTCCGTAGGGAACTGGCGCTCGCGTAGCGTATCCGAAGGATTCACCCGTAAGGGCAATATCAAACTT
CCAGGAAATATTGGAATAGTCAAAGCCAAAATACATAGACCGATTGAAGGGAAAATAAAGACTGTCACTGTTAGTAAAAC
ACCATCAGGTAAATACTTGGCATCTATCCTGACTGAAGTAGAGGGTGTTTCGACTCCGCTCAACACAAGTGAAAAGCCTG
CTATTACGGAGGGGAAGATTTACGGTATTGATTTAGGGCTAAAACATTTCGCTGTTGTGTCTGACGGTGAAAAGATTTCT
AAATACGATAATCCTAAACACCTTGCCAAGCATGAGAAAAACCTCAAGCGTAAACAAAAGAAGTTAGCCCGTAAAGTAAA
AGGGAGTAATTCAAGAAATAGATATAGAAAAGTTGTTGCCAAAGTGTACGAGCGAGTTAGTAATTCGCGGCAAGATTTTC
TACATAAACTTAGTTATAAGTTGGTCAGCGATAGCCAAGCTGTCATAGTAGAGAATCTTCACCTTCTGGGCATGGTACGC
AATCATAAATTGGCGAAGTCAATATCTGATGCAGGATGGGGAATGTTCACCAACTTTTTAGCCTACAAGCTAGAACGCAA
GGGTGGAAAGTTAGTTGAGATTGATAGGTGGTTTCCTAGTTCCAAACTCTGCTCTAATTGTTTCTACCAAATTGGTGAGA
TGCCGTTGGATGTCCGTGAATGGACTTGTCCTAGTTGTGGCACTCATCATGACAGGGATGGAAACGCAGCTATAAATATT
AGAGCCGAAGGCATCAGAATGATAAAGGCGGAAGGTTCAGCCGTCTCTGCTGTAGGAGGGGAGGTAAGTCCTAAGCTTGG
GCGAAAGTCTAAGTTTGGGCATTCCCCCGTGATTACAGAAGCCGACACTGTACTTGGTACTCCAAGTCAGTGTGGGTAG

Upstream 100 bases:

>100_bases
CAAATATTAGATGTATGACGAATCAACAATTATTTTCTCTTGATTGCTTACCACGAATTATATATCATGCTAAAATAAGT
ATATAAGGAGGTGAGGTTGA

Downstream 100 bases:

>100_bases
TTCACAATATCTCTAAACCAATACTCTAGGCGATCGCCCATTGCTTGTTGAGAATATTCTAACTCTGCCTGTTGGCGACA
AGCACGGCGATCAATTTTAT

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MLHKVVQVRLYPSIEQKVQLAQAFGCSRWWWNYALNKSIETYKETGKGLTRAALNALLPNLKKAEDTCWLADCYSQVLQA
TTLNLTTAYKNFFEKRAGFPKFKSKHGKQSIQYPQNVKIVDGESSPVRAASRREGGFPSVGNWRSRSVSEGFTRKGNIKL
PGNIGIVKAKIHRPIEGKIKTVTVSKTPSGKYLASILTEVEGVSTPLNTSEKPAITEGKIYGIDLGLKHFAVVSDGEKIS
KYDNPKHLAKHEKNLKRKQKKLARKVKGSNSRNRYRKVVAKVYERVSNSRQDFLHKLSYKLVSDSQAVIVENLHLLGMVR
NHKLAKSISDAGWGMFTNFLAYKLERKGGKLVEIDRWFPSSKLCSNCFYQIGEMPLDVREWTCPSCGTHHDRDGNAAINI
RAEGIRMIKAEGSAVSAVGGEVSPKLGRKSKFGHSPVITEADTVLGTPSQCG

Sequences:

>Translated_452_residues
MLHKVVQVRLYPSIEQKVQLAQAFGCSRWWWNYALNKSIETYKETGKGLTRAALNALLPNLKKAEDTCWLADCYSQVLQA
TTLNLTTAYKNFFEKRAGFPKFKSKHGKQSIQYPQNVKIVDGESSPVRAASRREGGFPSVGNWRSRSVSEGFTRKGNIKL
PGNIGIVKAKIHRPIEGKIKTVTVSKTPSGKYLASILTEVEGVSTPLNTSEKPAITEGKIYGIDLGLKHFAVVSDGEKIS
KYDNPKHLAKHEKNLKRKQKKLARKVKGSNSRNRYRKVVAKVYERVSNSRQDFLHKLSYKLVSDSQAVIVENLHLLGMVR
NHKLAKSISDAGWGMFTNFLAYKLERKGGKLVEIDRWFPSSKLCSNCFYQIGEMPLDVREWTCPSCGTHHDRDGNAAINI
RAEGIRMIKAEGSAVSAVGGEVSPKLGRKSKFGHSPVITEADTVLGTPSQCG
>Mature_452_residues
MLHKVVQVRLYPSIEQKVQLAQAFGCSRWWWNYALNKSIETYKETGKGLTRAALNALLPNLKKAEDTCWLADCYSQVLQA
TTLNLTTAYKNFFEKRAGFPKFKSKHGKQSIQYPQNVKIVDGESSPVRAASRREGGFPSVGNWRSRSVSEGFTRKGNIKL
PGNIGIVKAKIHRPIEGKIKTVTVSKTPSGKYLASILTEVEGVSTPLNTSEKPAITEGKIYGIDLGLKHFAVVSDGEKIS
KYDNPKHLAKHEKNLKRKQKKLARKVKGSNSRNRYRKVVAKVYERVSNSRQDFLHKLSYKLVSDSQAVIVENLHLLGMVR
NHKLAKSISDAGWGMFTNFLAYKLERKGGKLVEIDRWFPSSKLCSNCFYQIGEMPLDVREWTCPSCGTHHDRDGNAAINI
RAEGIRMIKAEGSAVSAVGGEVSPKLGRKSKFGHSPVITEADTVLGTPSQCG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=395, Percent_Identity=30.379746835443, Blast_Score=159, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50337; Mature: 50337

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHKVVQVRLYPSIEQKVQLAQAFGCSRWWWNYALNKSIETYKETGKGLTRAALNALLPN
CCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHCCC
LKKAEDTCWLADCYSQVLQATTLNLTTAYKNFFEKRAGFPKFKSKHGKQSIQYPQNVKIV
CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEE
DGESSPVRAASRREGGFPSVGNWRSRSVSEGFTRKGNIKLPGNIGIVKAKIHRPIEGKIK
CCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCEEEEEEECCCCCCCEE
TVTVSKTPSGKYLASILTEVEGVSTPLNTSEKPAITEGKIYGIDLGLKHFAVVSDGEKIS
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCHHHH
KYDNPKHLAKHEKNLKRKQKKLARKVKGSNSRNRYRKVVAKVYERVSNSRQDFLHKLSYK
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LVSDSQAVIVENLHLLGMVRNHKLAKSISDAGWGMFTNFLAYKLERKGGKLVEIDRWFPS
HHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
SKLCSNCFYQIGEMPLDVREWTCPSCGTHHDRDGNAAINIRAEGIRMIKAEGSAVSAVGG
HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCEEEECCC
EVSPKLGRKSKFGHSPVITEADTVLGTPSQCG
CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MLHKVVQVRLYPSIEQKVQLAQAFGCSRWWWNYALNKSIETYKETGKGLTRAALNALLPN
CCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHCCC
LKKAEDTCWLADCYSQVLQATTLNLTTAYKNFFEKRAGFPKFKSKHGKQSIQYPQNVKIV
CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEE
DGESSPVRAASRREGGFPSVGNWRSRSVSEGFTRKGNIKLPGNIGIVKAKIHRPIEGKIK
CCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCEEEEEEECCCCCCCEE
TVTVSKTPSGKYLASILTEVEGVSTPLNTSEKPAITEGKIYGIDLGLKHFAVVSDGEKIS
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCHHHH
KYDNPKHLAKHEKNLKRKQKKLARKVKGSNSRNRYRKVVAKVYERVSNSRQDFLHKLSYK
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LVSDSQAVIVENLHLLGMVRNHKLAKSISDAGWGMFTNFLAYKLERKGGKLVEIDRWFPS
HHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
SKLCSNCFYQIGEMPLDVREWTCPSCGTHHDRDGNAAINIRAEGIRMIKAEGSAVSAVGG
HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCEEEECCC
EVSPKLGRKSKFGHSPVITEADTVLGTPSQCG
CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]