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The map label for this gene is pchR [H]

Identifier: 17230079

GI number: 17230079

Start: 3092807

End: 3093790

Strand: Direct

Name: pchR [H]

Synonym: alr2587

Alternate gene names: 17230079

Gene position: 3092807-3093790 (Clockwise)

Preceding gene: 17230075

Following gene: 17230080

Centisome position: 48.22

GC content: 33.54

Gene sequence:

>984_bases
ATGGTACTCATCCTTCAGGAATCAGCAGATTGTTATCAATCATTGACAGAAAATAACAACACTCCGCAATCAAATATCTG
GGAAGCTCATATACATGATCCACAAGGTATGAGTCATGGTTATAGACAATGGTTTCATTTGCGCCCTGGAATATCTCTGC
TCACTGATCACTATCAGTTAAATAACGATTTAATTGTGGAGAAAATATCTGCTCCTAACTGTCTGTGGTTAGAGTTGAGT
TTTAGTATATTTGGTAATAATAATAATGAAGATGTCTACTCAGGACAAAATTTCTTATATGTATATAGAGAATTAGGCAA
AGCTGGTTATACTAAATGGCAAGCTCAGGAAAGAATCTTGAAGTTTGATATTCATATTGAATATTCACAAATTCAAAAAT
TACTTGCTCATCAAATGGATGTATTGCCTGTAAGCTTTAGGCAAATGTTTGAAAAAAATGATGATGAGCCTAATTATCGG
AATTTTGGGATTACCACCCACGAAATGCAAACTGTTTTACGTCAAATCTTAAATTGCCCATATCAAGGTTTGACAAAACA
ACTCTATTTGGAGGGTAAAATATTAGAACTATTAGCATTACGTTTAGAATATCTCCAAGAAAATCCTAATTTTAATAAAA
GCACGACTTTGAAACCTCATCAACTTGATAGTATTTATCATGCTAGAGATATTTTAATTAATAATATTAATAACCCACCT
TCATTAATAAATTTAGCCCGACAGGTAGGATTAAATGATTGCACCCTGAAAAAAGGTTTTCAAGAGATATTCGGTACTAC
AGTTTTTGGATATTTACACGAATATCGTATGGAAGAGGCGAAAGAATTACTCTTAGACAAGAAAATGAATGTGACTCAAG
TAGCTCAAATCGTCGGTTACGAAGCACGTACTTCTTTTATTAGGGCTTTCCGTAAAAAGTTCGGTGTGAGTCCTACTGCT
TATGTCCAAAAAAATTCCGCTTAG

Upstream 100 bases:

>100_bases
TGTCTGCTACTCTCTAACTGTAGAAACGACCAAAATTAATGATATAGTCTCTTATTTTTTTCTATTTTCTTAAGTAAACT
GTGTAGATAATTCTAAGTAA

Downstream 100 bases:

>100_bases
GTAACAGAAAAATTCCCGTTACGTCACACTTAGAGCTTTAACTCTCCGTTTAATTACAGTAAGATTCTTGCTAAGAATTA
CTAATAACAGAAGCAAGTCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MVLILQESADCYQSLTENNNTPQSNIWEAHIHDPQGMSHGYRQWFHLRPGISLLTDHYQLNNDLIVEKISAPNCLWLELS
FSIFGNNNNEDVYSGQNFLYVYRELGKAGYTKWQAQERILKFDIHIEYSQIQKLLAHQMDVLPVSFRQMFEKNDDEPNYR
NFGITTHEMQTVLRQILNCPYQGLTKQLYLEGKILELLALRLEYLQENPNFNKSTTLKPHQLDSIYHARDILINNINNPP
SLINLARQVGLNDCTLKKGFQEIFGTTVFGYLHEYRMEEAKELLLDKKMNVTQVAQIVGYEARTSFIRAFRKKFGVSPTA
YVQKNSA

Sequences:

>Translated_327_residues
MVLILQESADCYQSLTENNNTPQSNIWEAHIHDPQGMSHGYRQWFHLRPGISLLTDHYQLNNDLIVEKISAPNCLWLELS
FSIFGNNNNEDVYSGQNFLYVYRELGKAGYTKWQAQERILKFDIHIEYSQIQKLLAHQMDVLPVSFRQMFEKNDDEPNYR
NFGITTHEMQTVLRQILNCPYQGLTKQLYLEGKILELLALRLEYLQENPNFNKSTTLKPHQLDSIYHARDILINNINNPP
SLINLARQVGLNDCTLKKGFQEIFGTTVFGYLHEYRMEEAKELLLDKKMNVTQVAQIVGYEARTSFIRAFRKKFGVSPTA
YVQKNSA
>Mature_327_residues
MVLILQESADCYQSLTENNNTPQSNIWEAHIHDPQGMSHGYRQWFHLRPGISLLTDHYQLNNDLIVEKISAPNCLWLELS
FSIFGNNNNEDVYSGQNFLYVYRELGKAGYTKWQAQERILKFDIHIEYSQIQKLLAHQMDVLPVSFRQMFEKNDDEPNYR
NFGITTHEMQTVLRQILNCPYQGLTKQLYLEGKILELLALRLEYLQENPNFNKSTTLKPHQLDSIYHARDILINNINNPP
SLINLARQVGLNDCTLKKGFQEIFGTTVFGYLHEYRMEEAKELLLDKKMNVTQVAQIVGYEARTSFIRAFRKKFGVSPTA
YVQKNSA

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38104; Mature: 38104

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLILQESADCYQSLTENNNTPQSNIWEAHIHDPQGMSHGYRQWFHLRPGISLLTDHYQL
CEEEEECCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHC
NNDLIVEKISAPNCLWLELSFSIFGNNNNEDVYSGQNFLYVYRELGKAGYTKWQAQERIL
CCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCEE
KFDIHIEYSQIQKLLAHQMDVLPVSFRQMFEKNDDEPNYRNFGITTHEMQTVLRQILNCP
EEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
YQGLTKQLYLEGKILELLALRLEYLQENPNFNKSTTLKPHQLDSIYHARDILINNINNPP
HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
SLINLARQVGLNDCTLKKGFQEIFGTTVFGYLHEYRMEEAKELLLDKKMNVTQVAQIVGY
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EARTSFIRAFRKKFGVSPTAYVQKNSA
HHHHHHHHHHHHHHCCCCCCEEECCCC
>Mature Secondary Structure
MVLILQESADCYQSLTENNNTPQSNIWEAHIHDPQGMSHGYRQWFHLRPGISLLTDHYQL
CEEEEECCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHC
NNDLIVEKISAPNCLWLELSFSIFGNNNNEDVYSGQNFLYVYRELGKAGYTKWQAQERIL
CCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCEE
KFDIHIEYSQIQKLLAHQMDVLPVSFRQMFEKNDDEPNYRNFGITTHEMQTVLRQILNCP
EEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
YQGLTKQLYLEGKILELLALRLEYLQENPNFNKSTTLKPHQLDSIYHARDILINNINNPP
HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
SLINLARQVGLNDCTLKKGFQEIFGTTVFGYLHEYRMEEAKELLLDKKMNVTQVAQIVGY
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EARTSFIRAFRKKFGVSPTAYVQKNSA
HHHHHHHHHHHHHHCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]