| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is rhtA [H]
Identifier: 17230073
GI number: 17230073
Start: 3084353
End: 3086995
Strand: Direct
Name: rhtA [H]
Synonym: alr2581
Alternate gene names: 17230073
Gene position: 3084353-3086995 (Clockwise)
Preceding gene: 17230071
Following gene: 17230074
Centisome position: 48.09
GC content: 42.38
Gene sequence:
>2643_bases GTGAGAAGAGTGAGCGGTATGAAGTCTTGGCAACAGAAGGAAATCATTTCAGCAAGTCTTGTGTTTTCGTGCATATCATT GCTAGTGCAACCAGCCGTTGCTGAAACTCGATCGCATCATGATATTAGCAGCACCCAGCTGATGGCGCAACAATCAGCAG TCAAAGTTACAGGTGTGAAAGTCAACTCTACAGATAAAGGGATTGAAGTTCTCTTACAAACTCCCCAAGCAGAAGCATTG CAACCTGTAACTAAAACTGAAGCCAATAGTTATATTGCAGATATTCCCAATACAGTGTTAGAACTCCCAGAGGGTAAAGA TTTCAGCGTGAATAATCCTGTGGCTGGGATTGTGTCTGTAAATGTGACTCAAGCTGATGCTAATACTATCCGAGTGACGG TAACGGGAGAGTCACAAGTCCCAACCGTGGAATTATTTGATAGTGATGAAAGTCTGATTTTTAGCTTCACACCTGTTGTT TCAACGACACAAACACCAACACAACCAGAACAGCCAACTAGTGAAGAAACACCAGATGCAACAACATCTGAAAGCGACTC ATCAATTGAACTGGTCGTGACAGCAACGCGTACAGAAGAAGATATCCAAAATGTACCGCGTTCTGTAACTGTGATTACTC GTGAGCAGATTGAGGATCAAGCAAGGTTAAGCACTAACTTAGCTGACATTCTGGCAAAAACTGTTCCTGGCTTTGGTTCA CCAATTAGTCGGACTGATACATTCGGGCAAAATTTACGGGGTCGCAACATCTCAGTTTTAATTGACGGAGTTCCCCAAAA TGGTAATTTACAATCATTTTCTGCACAATTGACCACTATTGATCCCAGTGCAATTGAACGGATTGAAGTTGTGCGTGGCC CGAATGCGATCTATGGTGGTCAAGCAACTGGTGGTGTAGTCAATATTATTACTAAGAGGCCAAGCGGTCAAAAACTAACT TCCACAACAAATATTGGTTTGGATACCTCCTTAACTCGTTCCGAAGATAGTTTTGGTTATAACCTTTCCCATCAAATTGC GGGGACAGAAGGCAAATTTGATTATACTGTGGGTTTTTCGCTGGTGACAACTGCGGGTTTTTATGATGCAGAAGGCGATC GCATTGCTAATTTTGCAGGTGATGATGATAGCACCAAAATCAACGCCTTGGCTAAAATAGGAGTTGAATTATCGCCAGAA CAACGTCTGCAATTCACTTTCAATCACTTTAATCAGCAACAAAATAGTGATTTTATTTCCGACCCGGCCGTTGATGATAT TCCTGGTATTCAAAAATCTCGCGCCTTGAAGCTACCGGAAGGAACAACTGTGATTGGTGCTGATCAAGGGATTTCTATCA CAAATACTTTACTGAGCTTAAATTACAATAACGACAATATTTTCGGTAGCAAACTTCAGGCTCAAGCTTACTATCGTAAC TATAATTTTGCTGGGGGAATTCCTGATGATAACCGGGGTGGTAGCTTAAGAGCGATTACCGATTCAGAAGGGGGTACAGA ACAATTAGGCGGAAGATTGCAAGTTGAGACACCCTTCAACTCTCAAAAAACAGTGAGTTTACTTTGGGGTGTGGACTATC AAAATGAGCGTAGTTCTCAAAAATTTAATATTTTCGATCCTGGGGAATTTGACGCATCAGGGGGTCGAATCTTTCGCAAG ATTGAAGAGCGAGTTTTTGTTCCCGAATATGACTTTAGAGAACTGGGTGTATTTGGTCAATTGCAATGGGAAGTTAGTGA TAACCTGCGTTTAAGTGGTGGCTTGCGTTATGTGAATATAGGTGTGAGTTTAGACGACTACATCACCGCCGATTTTCCCC GTCGGAATATGCAAGGGGGCGATCGCAGTCTTGATTCTACAGTATTTAATGCAGGTATTGTCTATAAATTTACCCCAGAA GTTAGTGTATTTGCCAGCTTTTCTCAAGGCTTCTCAGTTCCCGATTTAGGTCGTGTCTTCCGACGACCCCCAGCAGGTGT AGTCAATATTTTAAACTCTCTGCAACTGACAGAACCACAGAAAGTAGACAACTATGAAATCGGCATTCGCGGTCAATGGG ATAATGTCCAAGCATCCTTGTCTGGTTTCTACAACTATTCTGATCTAGGTTCGGCTTTTAACTTTAACCGTAGCACTGAT TTTCTAGAGACTGTTCGCGCTCCTCAAAAAGTTTACGGTATAGAGGCTGCGGTTGATGTCCAACCTACTGAGGGTTGGAG AGTGGGGGGTACGGCGACTTGGATAGAAGGTGAAAATGATGCAAATAATGATGGTCAATATCTAGCACTCAACAGTATTA CAGTCCCACCATTGAAGTTGACCGCTTATGTAGAAAACCAAACCCTCAAAGGTTGGCGGAACAGATTACAATTACTTTAC TCAGGCGATCGTGATCGGGCTTTTGAAGATGGTGTAGAAGATGGTAAAATCAGCAGCTTCGTCACCGTAGACTACATCAG CAGCATCAAAATAGGTCAAGGGGAACTACAAATAGGCATTCAAAACCTCTTCAATAACCAATATTTCCCAGTTTACTCAC AATACTTTGCACCTTTCTTTGATAGTGCTAACTACGCAGGTCAAGGTAGAACCTTAAGCGTTGGGTATCGGATTATTTGG TAA
Upstream 100 bases:
>100_bases GGATCAAAAATCTCCGTCTGTGAGTAGACTTCTATATCGGAAATTACGTACACTCTTTCTCAAGATATTTGCAAATTAAT TGCAATATAAAGTTCGGATA
Downstream 100 bases:
>100_bases ATTTTAGGAAGAAAAACAGAGATAAAGAGGTCGCTGTATCAGTTTCTTAGCAGCAATAAAAAGATAAATAATTTAGTTAC GTGGGTGTTCGAGTCAGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: TonB-dependent siderophore receptor rhtA [H]
Number of amino acids: Translated: 880; Mature: 880
Protein sequence:
>880_residues MRRVSGMKSWQQKEIISASLVFSCISLLVQPAVAETRSHHDISSTQLMAQQSAVKVTGVKVNSTDKGIEVLLQTPQAEAL QPVTKTEANSYIADIPNTVLELPEGKDFSVNNPVAGIVSVNVTQADANTIRVTVTGESQVPTVELFDSDESLIFSFTPVV STTQTPTQPEQPTSEETPDATTSESDSSIELVVTATRTEEDIQNVPRSVTVITREQIEDQARLSTNLADILAKTVPGFGS PISRTDTFGQNLRGRNISVLIDGVPQNGNLQSFSAQLTTIDPSAIERIEVVRGPNAIYGGQATGGVVNIITKRPSGQKLT STTNIGLDTSLTRSEDSFGYNLSHQIAGTEGKFDYTVGFSLVTTAGFYDAEGDRIANFAGDDDSTKINALAKIGVELSPE QRLQFTFNHFNQQQNSDFISDPAVDDIPGIQKSRALKLPEGTTVIGADQGISITNTLLSLNYNNDNIFGSKLQAQAYYRN YNFAGGIPDDNRGGSLRAITDSEGGTEQLGGRLQVETPFNSQKTVSLLWGVDYQNERSSQKFNIFDPGEFDASGGRIFRK IEERVFVPEYDFRELGVFGQLQWEVSDNLRLSGGLRYVNIGVSLDDYITADFPRRNMQGGDRSLDSTVFNAGIVYKFTPE VSVFASFSQGFSVPDLGRVFRRPPAGVVNILNSLQLTEPQKVDNYEIGIRGQWDNVQASLSGFYNYSDLGSAFNFNRSTD FLETVRAPQKVYGIEAAVDVQPTEGWRVGGTATWIEGENDANNDGQYLALNSITVPPLKLTAYVENQTLKGWRNRLQLLY SGDRDRAFEDGVEDGKISSFVTVDYISSIKIGQGELQIGIQNLFNNQYFPVYSQYFAPFFDSANYAGQGRTLSVGYRIIW
Sequences:
>Translated_880_residues MRRVSGMKSWQQKEIISASLVFSCISLLVQPAVAETRSHHDISSTQLMAQQSAVKVTGVKVNSTDKGIEVLLQTPQAEAL QPVTKTEANSYIADIPNTVLELPEGKDFSVNNPVAGIVSVNVTQADANTIRVTVTGESQVPTVELFDSDESLIFSFTPVV STTQTPTQPEQPTSEETPDATTSESDSSIELVVTATRTEEDIQNVPRSVTVITREQIEDQARLSTNLADILAKTVPGFGS PISRTDTFGQNLRGRNISVLIDGVPQNGNLQSFSAQLTTIDPSAIERIEVVRGPNAIYGGQATGGVVNIITKRPSGQKLT STTNIGLDTSLTRSEDSFGYNLSHQIAGTEGKFDYTVGFSLVTTAGFYDAEGDRIANFAGDDDSTKINALAKIGVELSPE QRLQFTFNHFNQQQNSDFISDPAVDDIPGIQKSRALKLPEGTTVIGADQGISITNTLLSLNYNNDNIFGSKLQAQAYYRN YNFAGGIPDDNRGGSLRAITDSEGGTEQLGGRLQVETPFNSQKTVSLLWGVDYQNERSSQKFNIFDPGEFDASGGRIFRK IEERVFVPEYDFRELGVFGQLQWEVSDNLRLSGGLRYVNIGVSLDDYITADFPRRNMQGGDRSLDSTVFNAGIVYKFTPE VSVFASFSQGFSVPDLGRVFRRPPAGVVNILNSLQLTEPQKVDNYEIGIRGQWDNVQASLSGFYNYSDLGSAFNFNRSTD FLETVRAPQKVYGIEAAVDVQPTEGWRVGGTATWIEGENDANNDGQYLALNSITVPPLKLTAYVENQTLKGWRNRLQLLY SGDRDRAFEDGVEDGKISSFVTVDYISSIKIGQGELQIGIQNLFNNQYFPVYSQYFAPFFDSANYAGQGRTLSVGYRIIW >Mature_880_residues MRRVSGMKSWQQKEIISASLVFSCISLLVQPAVAETRSHHDISSTQLMAQQSAVKVTGVKVNSTDKGIEVLLQTPQAEAL QPVTKTEANSYIADIPNTVLELPEGKDFSVNNPVAGIVSVNVTQADANTIRVTVTGESQVPTVELFDSDESLIFSFTPVV STTQTPTQPEQPTSEETPDATTSESDSSIELVVTATRTEEDIQNVPRSVTVITREQIEDQARLSTNLADILAKTVPGFGS PISRTDTFGQNLRGRNISVLIDGVPQNGNLQSFSAQLTTIDPSAIERIEVVRGPNAIYGGQATGGVVNIITKRPSGQKLT STTNIGLDTSLTRSEDSFGYNLSHQIAGTEGKFDYTVGFSLVTTAGFYDAEGDRIANFAGDDDSTKINALAKIGVELSPE QRLQFTFNHFNQQQNSDFISDPAVDDIPGIQKSRALKLPEGTTVIGADQGISITNTLLSLNYNNDNIFGSKLQAQAYYRN YNFAGGIPDDNRGGSLRAITDSEGGTEQLGGRLQVETPFNSQKTVSLLWGVDYQNERSSQKFNIFDPGEFDASGGRIFRK IEERVFVPEYDFRELGVFGQLQWEVSDNLRLSGGLRYVNIGVSLDDYITADFPRRNMQGGDRSLDSTVFNAGIVYKFTPE VSVFASFSQGFSVPDLGRVFRRPPAGVVNILNSLQLTEPQKVDNYEIGIRGQWDNVQASLSGFYNYSDLGSAFNFNRSTD FLETVRAPQKVYGIEAAVDVQPTEGWRVGGTATWIEGENDANNDGQYLALNSITVPPLKLTAYVENQTLKGWRNRLQLLY SGDRDRAFEDGVEDGKISSFVTVDYISSIKIGQGELQIGIQNLFNNQYFPVYSQYFAPFFDSANYAGQGRTLSVGYRIIW
Specific function: Receptor for the siderophore rhizobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787723, Length=797, Percent_Identity=23.3375156838143, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1788478, Length=158, Percent_Identity=38.6075949367089, Blast_Score=80, Evalue=6e-16, Organism=Escherichia coli, GI1790405, Length=131, Percent_Identity=41.9847328244275, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 96444; Mature: 96444
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRVSGMKSWQQKEIISASLVFSCISLLVQPAVAETRSHHDISSTQLMAQQSAVKVTGVK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEEEE VNSTDKGIEVLLQTPQAEALQPVTKTEANSYIADIPNTVLELPEGKDFSVNNPVAGIVSV ECCCCCCEEEEEECCCHHHHCCHHHHCCCCEEHHCCHHHHCCCCCCCCCCCCCEEEEEEE NVTQADANTIRVTVTGESQVPTVELFDSDESLIFSFTPVVSTTQTPTQPEQPTSEETPDA EEEECCCCEEEEEEECCCCCCEEEEECCCCCEEEEEECCEECCCCCCCCCCCCCCCCCCC TTSESDSSIELVVTATRTEEDIQNVPRSVTVITREQIEDQARLSTNLADILAKTVPGFGS CCCCCCCCEEEEEEECCCHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC PISRTDTFGQNLRGRNISVLIDGVPQNGNLQSFSAQLTTIDPSAIERIEVVRGPNAIYGG CCCCCHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEEEECHHHHHHHHEECCCCEEECC QATGGVVNIITKRPSGQKLTSTTNIGLDTSLTRSEDSFGYNLSHQIAGTEGKFDYTVGFS CCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECEE LVTTAGFYDAEGDRIANFAGDDDSTKINALAKIGVELSPEQRLQFTFNHFNQQQNSDFIS EEEECCEECCCCCEEEECCCCCCCCCEEEEEEECCEECCCHHEEEEHHHHCCCCCCCCCC DPAVDDIPGIQKSRALKLPEGTTVIGADQGISITNTLLSLNYNNDNIFGSKLQAQAYYRN CCCCCCCCCCCCCCEEECCCCCEEEECCCCCEEEEEEEEEECCCCCEECCEEEEEEEEEC YNFAGGIPDDNRGGSLRAITDSEGGTEQLGGRLQVETPFNSQKTVSLLWGVDYQNERSSQ CCCCCCCCCCCCCCEEEEEECCCCCHHHHCCEEEEECCCCCCCEEEEEECCCCCCCCCCC KFNIFDPGEFDASGGRIFRKIEERVFVPEYDFRELGVFGQLQWEVSDNLRLSGGLRYVNI EEECCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCEEEEEEEECCCEEEECCEEEEEE GVSLDDYITADFPRRNMQGGDRSLDSTVFNAGIVYKFTPEVSVFASFSQGFSVPDLGRVF CCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCEEEEECCCEEEEEEHHCCCCCCCHHHHH RRPPAGVVNILNSLQLTEPQKVDNYEIGIRGQWDNVQASLSGFYNYSDLGSAFNFNRSTD CCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCHHHCCCCCCCCCCHH FLETVRAPQKVYGIEAAVDVQPTEGWRVGGTATWIEGENDANNDGQYLALNSITVPPLKL HHHHHCCCHHHCCCEEEEEECCCCCEEECCEEEEEECCCCCCCCCCEEEECCCCCCCEEE TAYVENQTLKGWRNRLQLLYSGDRDRAFEDGVEDGKISSFVTVDYISSIKIGQGELQIGI EEEECCCHHHHHHHHEEEEECCCCCCHHHCCCCCCCCEEEEEEEECCCEEECCCCEEEEH QNLFNNQYFPVYSQYFAPFFDSANYAGQGRTLSVGYRIIW HHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECEEEEC >Mature Secondary Structure MRRVSGMKSWQQKEIISASLVFSCISLLVQPAVAETRSHHDISSTQLMAQQSAVKVTGVK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEEEE VNSTDKGIEVLLQTPQAEALQPVTKTEANSYIADIPNTVLELPEGKDFSVNNPVAGIVSV ECCCCCCEEEEEECCCHHHHCCHHHHCCCCEEHHCCHHHHCCCCCCCCCCCCCEEEEEEE NVTQADANTIRVTVTGESQVPTVELFDSDESLIFSFTPVVSTTQTPTQPEQPTSEETPDA EEEECCCCEEEEEEECCCCCCEEEEECCCCCEEEEEECCEECCCCCCCCCCCCCCCCCCC TTSESDSSIELVVTATRTEEDIQNVPRSVTVITREQIEDQARLSTNLADILAKTVPGFGS CCCCCCCCEEEEEEECCCHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC PISRTDTFGQNLRGRNISVLIDGVPQNGNLQSFSAQLTTIDPSAIERIEVVRGPNAIYGG CCCCCHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEEEECHHHHHHHHEECCCCEEECC QATGGVVNIITKRPSGQKLTSTTNIGLDTSLTRSEDSFGYNLSHQIAGTEGKFDYTVGFS CCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECEE LVTTAGFYDAEGDRIANFAGDDDSTKINALAKIGVELSPEQRLQFTFNHFNQQQNSDFIS EEEECCEECCCCCEEEECCCCCCCCCEEEEEEECCEECCCHHEEEEHHHHCCCCCCCCCC DPAVDDIPGIQKSRALKLPEGTTVIGADQGISITNTLLSLNYNNDNIFGSKLQAQAYYRN CCCCCCCCCCCCCCEEECCCCCEEEECCCCCEEEEEEEEEECCCCCEECCEEEEEEEEEC YNFAGGIPDDNRGGSLRAITDSEGGTEQLGGRLQVETPFNSQKTVSLLWGVDYQNERSSQ CCCCCCCCCCCCCCEEEEEECCCCCHHHHCCEEEEECCCCCCCEEEEEECCCCCCCCCCC KFNIFDPGEFDASGGRIFRKIEERVFVPEYDFRELGVFGQLQWEVSDNLRLSGGLRYVNI EEECCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCEEEEEEEECCCEEEECCEEEEEE GVSLDDYITADFPRRNMQGGDRSLDSTVFNAGIVYKFTPEVSVFASFSQGFSVPDLGRVF CCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCEEEEECCCEEEEEEHHCCCCCCCHHHHH RRPPAGVVNILNSLQLTEPQKVDNYEIGIRGQWDNVQASLSGFYNYSDLGSAFNFNRSTD CCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCHHHCCCCCCCCCCHH FLETVRAPQKVYGIEAAVDVQPTEGWRVGGTATWIEGENDANNDGQYLALNSITVPPLKL HHHHHCCCHHHCCCEEEEEECCCCCEEECCEEEEEECCCCCCCCCCEEEECCCCCCCEEE TAYVENQTLKGWRNRLQLLYSGDRDRAFEDGVEDGKISSFVTVDYISSIKIGQGELQIGI EEEECCCHHHHHHHHEEEEECCCCCCHHHCCCCCCCCEEEEEEEECCCEEECCCCEEEEH QNLFNNQYFPVYSQYFAPFFDSANYAGQGRTLSVGYRIIW HHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11274118; 11481432 [H]