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The map label for this gene is pchR [H]

Identifier: 17230067

GI number: 17230067

Start: 3077739

End: 3078758

Strand: Direct

Name: pchR [H]

Synonym: alr2575

Alternate gene names: 17230067

Gene position: 3077739-3078758 (Clockwise)

Preceding gene: 17230066

Following gene: 17230068

Centisome position: 47.99

GC content: 38.14

Gene sequence:

>1020_bases
ATGTTGGAAATTCTGACGAAAGAACAATACGATGAAGTTGTAGAAGGCAGCTTGCAGATGTTACAGGCTGTAGATCCTAG
TCAGTCCTTCGACTTTGTATATAAATGGGAAAGTCACTTTACTCGTACTTCCTATCAGGAAGTGCAGCTACGCCCAGGAT
TATCTCTAGAAATTTTTGATAAAACTCAATATCGCCAAGTAAATATTCAAAATAATCATGACGAAGAATATCCACTAATC
GCAAAATTTTATCTAGCTGGAAATCATAGTGTAATTTGCCCTGGTATTGCAGGAGTTAGGGAAAAATATCAAGAAACAGG
AGGCAATAATTATTTATTTTACTTACCAGATATTGAAGAAATCGAGCAATATTTTGCAGGCGATCGCTATTATATAATCA
GAATTATTTTTGACATCAATTTCCTCAGAAATTTTGTTACTGGGTTGACACCTGTTCCCAATCAATTGCAACCTTTGCTA
GAAAGTGATCATCCACCGCGTTTTCATCTGCCTGTGGGTAAAATCACGCCCACCATGCAAACTATACTATCACAGCTTTT
AAATGCACCCTATCAAGGTATGGTGCAACGCATTTATCTAGAAAGCAAGGTGCTGGAACTGCTGGCTTTGCAATTAGCGC
AAATATTGGAAACTGAACAAAATCGCCAAACTTTAATTAACCTCAAAGCCTCTGACATTGAAAGAATTTATCACGCCAAA
GACATTTTAATTAGTCAATATGATAATCCGCCGACACTGCTAGATTTAGCCAGAAGAGTAGGTGTCAATGACAATAAATT
AAAATTAGGTTTTCGGGAAGTCTTTGGTACAACAGTCTTTGGCTACTTACATAACTACCGCATGGAAATGGCGCAAATGC
TTTTACAGGAAGGTAAACAAAGTGTAGCTGAGGTAGCATCTCATGTGGGATATTCTAACCCAGGGCATTTTGCAGCCGCA
TTCAAGCGGAAATTTGGCATGAGTCCGAAAGTGTGTAGATTAGGAAGAAAAACGGCTTAA

Upstream 100 bases:

>100_bases
TTCTCTATTGTGATTATTCCTAAAATAGGGTAAATTATCAGGTAATATTTTCATAAATAGAAAATTTTAGCAATTATTTG
TTTGAAATTGCTGCCAAATA

Downstream 100 bases:

>100_bases
TTAATCTACAAAATCTTAAATTGCATGATGTTTTAACATGATGATGATAAACACAAATCTAGCAGTTAACCCATGAGCGA
GGAAAGAGAAAGAGCCGATA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MLEILTKEQYDEVVEGSLQMLQAVDPSQSFDFVYKWESHFTRTSYQEVQLRPGLSLEIFDKTQYRQVNIQNNHDEEYPLI
AKFYLAGNHSVICPGIAGVREKYQETGGNNYLFYLPDIEEIEQYFAGDRYYIIRIIFDINFLRNFVTGLTPVPNQLQPLL
ESDHPPRFHLPVGKITPTMQTILSQLLNAPYQGMVQRIYLESKVLELLALQLAQILETEQNRQTLINLKASDIERIYHAK
DILISQYDNPPTLLDLARRVGVNDNKLKLGFREVFGTTVFGYLHNYRMEMAQMLLQEGKQSVAEVASHVGYSNPGHFAAA
FKRKFGMSPKVCRLGRKTA

Sequences:

>Translated_339_residues
MLEILTKEQYDEVVEGSLQMLQAVDPSQSFDFVYKWESHFTRTSYQEVQLRPGLSLEIFDKTQYRQVNIQNNHDEEYPLI
AKFYLAGNHSVICPGIAGVREKYQETGGNNYLFYLPDIEEIEQYFAGDRYYIIRIIFDINFLRNFVTGLTPVPNQLQPLL
ESDHPPRFHLPVGKITPTMQTILSQLLNAPYQGMVQRIYLESKVLELLALQLAQILETEQNRQTLINLKASDIERIYHAK
DILISQYDNPPTLLDLARRVGVNDNKLKLGFREVFGTTVFGYLHNYRMEMAQMLLQEGKQSVAEVASHVGYSNPGHFAAA
FKRKFGMSPKVCRLGRKTA
>Mature_339_residues
MLEILTKEQYDEVVEGSLQMLQAVDPSQSFDFVYKWESHFTRTSYQEVQLRPGLSLEIFDKTQYRQVNIQNNHDEEYPLI
AKFYLAGNHSVICPGIAGVREKYQETGGNNYLFYLPDIEEIEQYFAGDRYYIIRIIFDINFLRNFVTGLTPVPNQLQPLL
ESDHPPRFHLPVGKITPTMQTILSQLLNAPYQGMVQRIYLESKVLELLALQLAQILETEQNRQTLINLKASDIERIYHAK
DILISQYDNPPTLLDLARRVGVNDNKLKLGFREVFGTTVFGYLHNYRMEMAQMLLQEGKQSVAEVASHVGYSNPGHFAAA
FKRKFGMSPKVCRLGRKTA

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39079; Mature: 39079

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEILTKEQYDEVVEGSLQMLQAVDPSQSFDFVYKWESHFTRTSYQEVQLRPGLSLEIFD
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHCCCCCHHHEEECCCCEEEEEC
KTQYRQVNIQNNHDEEYPLIAKFYLAGNHSVICPGIAGVREKYQETGGNNYLFYLPDIEE
CCCEEEEECCCCCCCCCCEEEEEEEECCCCEECCCHHHHHHHHHHCCCCEEEEECCCHHH
IEQYFAGDRYYIIRIIFDINFLRNFVTGLTPVPNQLQPLLESDHPPRFHLPVGKITPTMQ
HHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEECCCCCCCHHHH
TILSQLLNAPYQGMVQRIYLESKVLELLALQLAQILETEQNRQTLINLKASDIERIYHAK
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCHHHHHHHHHHH
DILISQYDNPPTLLDLARRVGVNDNKLKLGFREVFGTTVFGYLHNYRMEMAQMLLQEGKQ
HHHHHCCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVAEVASHVGYSNPGHFAAAFKRKFGMSPKVCRLGRKTA
HHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCC
>Mature Secondary Structure
MLEILTKEQYDEVVEGSLQMLQAVDPSQSFDFVYKWESHFTRTSYQEVQLRPGLSLEIFD
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHCCCCCHHHEEECCCCEEEEEC
KTQYRQVNIQNNHDEEYPLIAKFYLAGNHSVICPGIAGVREKYQETGGNNYLFYLPDIEE
CCCEEEEECCCCCCCCCCEEEEEEEECCCCEECCCHHHHHHHHHHCCCCEEEEECCCHHH
IEQYFAGDRYYIIRIIFDINFLRNFVTGLTPVPNQLQPLLESDHPPRFHLPVGKITPTMQ
HHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEECCCCCCCHHHH
TILSQLLNAPYQGMVQRIYLESKVLELLALQLAQILETEQNRQTLINLKASDIERIYHAK
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCHHHHHHHHHHH
DILISQYDNPPTLLDLARRVGVNDNKLKLGFREVFGTTVFGYLHNYRMEMAQMLLQEGKQ
HHHHHCCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVAEVASHVGYSNPGHFAAAFKRKFGMSPKVCRLGRKTA
HHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]