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The map label for this gene is ygaF [H]

Identifier: 17229995

GI number: 17229995

Start: 3004907

End: 3005386

Strand: Direct

Name: ygaF [H]

Synonym: alr2503

Alternate gene names: 17229995

Gene position: 3004907-3005386 (Clockwise)

Preceding gene: 17229994

Following gene: 17229996

Centisome position: 46.85

GC content: 39.79

Gene sequence:

>480_bases
ATGAGCAACATTCCCCAAGCCGGACAGCCAGCACCAGATTTCTCAACTCCTGACCAGAACGGTAATTTAGTGAGTCTGAA
TGATTTTCAGGGTCAATGGGTTGTCATATATTTCTACCCCAAAGATGACACCCCTGGGTGTACCACAGAAGCCAAAGATT
TCACAGGTTTACATCAGGAATTTAATCAATTAGGAGCAAAAATTTTAGGAGTCAGTCCCGACTCTGGTAAGGCACACTGC
AAATTTATTGACAAACATAATTTATCGATTAACCTATTAAGTGACCCTGAACATCAACTCATAGAGGCCTATGGTGCTTG
GCGGTTAAAGAAATTTATGGGCAAAGAATATATGGGTGTAGCGCGTTCAACTTTTCTGATATCAACTGATGGCATCATCG
CCTATGCTTGGCCTAATGTCAAAACTAAAGGTCATGCTCAAGCAGTGTTAAATAAGTTACAAGAATTAATTAATAGTTAA

Upstream 100 bases:

>100_bases
GAAACTTCTCAATTACAGCGTAGCGGCAATGTAGAGTAGGTAGAAACCTCAACAAATATCCTCAGTATTCCAAACAACAC
AGTATTACACCAGTATCATC

Downstream 100 bases:

>100_bases
ATTAGGTTATGACAAATATCAGCGCAGTAAACAGTCATTGACTGATGCTGCGTTTTGTATATTTTTATAATAGATACTAC
ATGACAAAATTTTTACATAC

Product: bacterioferritin comigratory protein

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSNIPQAGQPAPDFSTPDQNGNLVSLNDFQGQWVVIYFYPKDDTPGCTTEAKDFTGLHQEFNQLGAKILGVSPDSGKAHC
KFIDKHNLSINLLSDPEHQLIEAYGAWRLKKFMGKEYMGVARSTFLISTDGIIAYAWPNVKTKGHAQAVLNKLQELINS

Sequences:

>Translated_159_residues
MSNIPQAGQPAPDFSTPDQNGNLVSLNDFQGQWVVIYFYPKDDTPGCTTEAKDFTGLHQEFNQLGAKILGVSPDSGKAHC
KFIDKHNLSINLLSDPEHQLIEAYGAWRLKKFMGKEYMGVARSTFLISTDGIIAYAWPNVKTKGHAQAVLNKLQELINS
>Mature_158_residues
SNIPQAGQPAPDFSTPDQNGNLVSLNDFQGQWVVIYFYPKDDTPGCTTEAKDFTGLHQEFNQLGAKILGVSPDSGKAHCK
FIDKHNLSINLLSDPEHQLIEAYGAWRLKKFMGKEYMGVARSTFLISTDGIIAYAWPNVKTKGHAQAVLNKLQELINS

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI32189392, Length=138, Percent_Identity=36.231884057971, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI4505591, Length=139, Percent_Identity=32.3741007194245, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI32455266, Length=139, Percent_Identity=32.3741007194245, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI32455264, Length=139, Percent_Identity=32.3741007194245, Blast_Score=71, Evalue=5e-13,
Organism=Escherichia coli, GI1788825, Length=150, Percent_Identity=46, Blast_Score=139, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI32565831, Length=131, Percent_Identity=35.8778625954198, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193204376, Length=131, Percent_Identity=35.8778625954198, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322180, Length=105, Percent_Identity=37.1428571428571, Blast_Score=71, Evalue=8e-14,
Organism=Drosophila melanogaster, GI17738015, Length=138, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17612; Mature: 17481

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIPQAGQPAPDFSTPDQNGNLVSLNDFQGQWVVIYFYPKDDTPGCTTEAKDFTGLHQE
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHH
FNQLGAKILGVSPDSGKAHCKFIDKHNLSINLLSDPEHQLIEAYGAWRLKKFMGKEYMGV
HHHHCCEEEEECCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCHHHHCC
ARSTFLISTDGIIAYAWPNVKTKGHAQAVLNKLQELINS
HHEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNIPQAGQPAPDFSTPDQNGNLVSLNDFQGQWVVIYFYPKDDTPGCTTEAKDFTGLHQE
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHH
FNQLGAKILGVSPDSGKAHCKFIDKHNLSINLLSDPEHQLIEAYGAWRLKKFMGKEYMGV
HHHHCCEEEEECCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCHHHHCC
ARSTFLISTDGIIAYAWPNVKTKGHAQAVLNKLQELINS
HHEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]