Click here to switch to the map view.

The map label for this gene is 17228893

Identifier: 17228893

GI number: 17228893

Start: 1663359

End: 1665893

Strand: Direct

Name: 17228893

Synonym: alr1398

Alternate gene names: NA

Gene position: 1663359-1665893 (Clockwise)

Preceding gene: 17228892

Following gene: 17228894

Centisome position: 25.93

GC content: 43.16

Gene sequence:

>2535_bases
ATGCGGCGAGTTTTTACTTTTCTGCTTTGTGCCTTACTAGGTATGGGCTTTACTCTTATACCCCAATGGCATCAAGTCCA
AGCTTCAATTTCTCAATCATCCCCACTCCCCACTCCCCAGTTAATTCAACAAGGCAGAGAACTATACCAAGCAGAACAAT
ATACTCAAGCTGTGGATGTTTGGCGAGCTGCACTTAAAGCAGAAACCAATATATTGTCCCAGGCAATGTTGTTAAATTAC
CTTTCCCTGGCTTATCAAGAATTGGGACAGTGGCAACAGGCAAATGAGACAATTAACTCTAGCCTCAACCTCATACAACA
ATCAAAACAGACAACTCCACAAGCCAAGCTTATCCTCGCCCAAGCTCTTAATACTCAAGGAAGTTGGCAGCTAGCGCAAG
GTAAAGCCGAACAAGCCCTCAACACTTGGCAACAGGCAACAGCCATATATACTACAGCAGGAAATGTACAGGGTAAAATT
GGCAGCTTAATTAATCAAGCCCAAGCTCAACAAGCTTTAGGGCTTTACCTCCAAGCTCGTAAAACTCTAGCTGGAGTGGA
ACAAGGACTACAACAACAGCCAAATCAAAAATTGCAAATTACAGGGCTGCGTAGTCTGGGAAATATCTTCAGATTGGTAG
GCGCTCTAGACGATTCTCGGAGGGTTTTGCAGCAAAGTTTGCAGATAATTAATCAAGGCAATGTATCAAAATCAGAACTA
AGTCCAACCTTAATCAGCTTGGGTAATACAGCTGATGCCCAAGGCGACAAAGAAGGGGCATTAACATATTATGAACAAGC
GGCGGCGAATGCGACTGTTACCTTAACGCAGATTCAAGCACAAATCAATCAACTGAACATATTAATAACAACTGGACAAG
CCAAGCAAGCTGAAAATCTAGGGAAACAAATTCAGCCCAAGTTGACTAATTTATCTCCCAGCCGTCAGACGATTTACGCC
AGCATTAACTTGGCAAAAAGTCTGATGAAATTGACTGGTGAGGGAGTAGACGAATCTGCTAAACTACTAGCCACAGCCAT
TAAACAAGCCCAAAACTTGAGCGATCGCCAAGCTGAATCTTATGCTTTAGGCTATCTCGCTGGACTCTATGAACAAACTC
AACAGTGGTCAAACGCTCAAGAATTAACTCAACAGGCTTTGCAACTAGCACAAGCTATTAATGCCCCAGAAATAGCCTAT
CAGTGGCAATGGCAATTAGGACGTATCTTAAAAGCACAAGGCGCAATCAAGCCAGCAACATCCGCCTATGAGGTAGCCTT
CACCACCTTGAAATCTCTGCGGAGTGATTTGGTAGCAATTAACAGTGATATTCAATTTTCTTTTCGTGAAGCCGTCGAGC
CTGTATATCGTGAATATGTAGAATTACTATTGAATCCAGGCAAAAGCTTAGAACCCAGTCAGCAACAACTCAAACAAGCT
AGGCAAGTCATCGAATCACTACAACTAGCCGAACTTGACAACTTTTTTCGCTCTGCTTGTCTCCAAGGTCAAATAGTTCC
AATTGAGCAGATTCAACAGTCAGAAGCCGCAATCATTTATCCGATTATTCTGCCAGATAGACTGGAAGTAATTGTCAGTT
TACCCCAGCAGACCCTACGCCACTACGCCACCAAAATAAGTCAACACGAAGTAGAAGAAGTTCTAGACCAACTCAGACAA
AATTTAGAAAAGCCTTTCACCTCACCAGAGGGTAAGAATTTATCTACGAAAGTTTATGACTGGTTGATTCGACCTCTAGA
AACACAACTGTCTCAAACTCAAGTGCAAACATTAGTGTTCGTCTTAGATGGTTCCCTACGGAACGTGCCAATGGCGGCTT
TATTTGACGGCAAACAGTATTTAATTGAAAAATACAGTGTGGCACTCACACCTGGGTTAGAGTTATTAGGCCCCCGGCCT
TTGCGCCAAGGTCAACTCAAAACCTTAGTTGCAGGACTGACAGAAGCACGCCACGGATTTAATTCCCTCCCCAATGTGGG
TGATGAATTAAAAGCAATTGAGTCAGAAGTGCCTAGTCAAGTCCTCTTGAATCAAACCTTTACCAGTGCAGCCTTACGAA
AGCAGATAGACTCTCTACCGTTTTCCATCGTGCATTTAGCAACACATGGTCAATTTAGTTCCAATGTTGATGAAACTTTT
GTCCTGGCTTGGGATAAACCAGTCAAAGTTAATGAATTAAAAGACTTACTGTATAACAGAAACCAAAATAGACCTGAGCC
GATAGAATTACTTGTTCTCAGTGCTTGTGAAACCGCCGACGGAGACAAAAGAGCCGCTTTAGGATTAGCTGGGGTAGCCA
TTCAAGCAGGCGCGCGCAGTACTCTAGCCTCCCTTTGGAGTTTAGACGATGAATCTGGCGCTCGTCTCATTGGTCAATTT
TATAAAGAGTTAGCAACTAAACAAGTGACAAAGGCAGAAGCACTGCGCCAAGCCCAAATCTCCCTATTAAAAGACCCCGA
TTACAGGCATCCTATACATTGGGCATCCTATGTATTATTGGGAAATTGGCTTTAA

Upstream 100 bases:

>100_bases
TTTAGGGGTTTAGGGGTGTGGGGGTGTAGGGGAAAGACTTAATTTATTTTGAATTTTGAATTTTGAATTTTGAATTGTCA
ACTTTGAATTGTCAACATTT

Downstream 100 bases:

>100_bases
GTGCGATCGCTATTAGACAATTAAAAAAATTTATCAGGCAGTGACTACAATGACGCTAAATTCTTATGACGAAGCAGCTC
TTAGAGTCAACTTGATAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; Haemagglutination Activity Domain Protein; Tetratricopeptide Repeat Family; Filamentous Haemagglutinin Outer Membrane Protein; Filamentous Hemagglutinin Family Outer Membrane Protein; Tetratricopeptide Domain-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Domain Protein; Filamentous Haemagglutinin Family N-Terminal Domain Protein; Tetratricopeptide Region; WD-40 Repeat-Containing Protein; TPR Domain-Containing Protein; Kinesin Light Chain; Tetratricopeptide Repeat-Containing Protein; Peptidase Domain-Containing Protein; Hemagglutination Activity Domain-Containing Protein; Peptidase Domain Protein; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 844; Mature: 844

Protein sequence:

>844_residues
MRRVFTFLLCALLGMGFTLIPQWHQVQASISQSSPLPTPQLIQQGRELYQAEQYTQAVDVWRAALKAETNILSQAMLLNY
LSLAYQELGQWQQANETINSSLNLIQQSKQTTPQAKLILAQALNTQGSWQLAQGKAEQALNTWQQATAIYTTAGNVQGKI
GSLINQAQAQQALGLYLQARKTLAGVEQGLQQQPNQKLQITGLRSLGNIFRLVGALDDSRRVLQQSLQIINQGNVSKSEL
SPTLISLGNTADAQGDKEGALTYYEQAAANATVTLTQIQAQINQLNILITTGQAKQAENLGKQIQPKLTNLSPSRQTIYA
SINLAKSLMKLTGEGVDESAKLLATAIKQAQNLSDRQAESYALGYLAGLYEQTQQWSNAQELTQQALQLAQAINAPEIAY
QWQWQLGRILKAQGAIKPATSAYEVAFTTLKSLRSDLVAINSDIQFSFREAVEPVYREYVELLLNPGKSLEPSQQQLKQA
RQVIESLQLAELDNFFRSACLQGQIVPIEQIQQSEAAIIYPIILPDRLEVIVSLPQQTLRHYATKISQHEVEEVLDQLRQ
NLEKPFTSPEGKNLSTKVYDWLIRPLETQLSQTQVQTLVFVLDGSLRNVPMAALFDGKQYLIEKYSVALTPGLELLGPRP
LRQGQLKTLVAGLTEARHGFNSLPNVGDELKAIESEVPSQVLLNQTFTSAALRKQIDSLPFSIVHLATHGQFSSNVDETF
VLAWDKPVKVNELKDLLYNRNQNRPEPIELLVLSACETADGDKRAALGLAGVAIQAGARSTLASLWSLDDESGARLIGQF
YKELATKQVTKAEALRQAQISLLKDPDYRHPIHWASYVLLGNWL

Sequences:

>Translated_844_residues
MRRVFTFLLCALLGMGFTLIPQWHQVQASISQSSPLPTPQLIQQGRELYQAEQYTQAVDVWRAALKAETNILSQAMLLNY
LSLAYQELGQWQQANETINSSLNLIQQSKQTTPQAKLILAQALNTQGSWQLAQGKAEQALNTWQQATAIYTTAGNVQGKI
GSLINQAQAQQALGLYLQARKTLAGVEQGLQQQPNQKLQITGLRSLGNIFRLVGALDDSRRVLQQSLQIINQGNVSKSEL
SPTLISLGNTADAQGDKEGALTYYEQAAANATVTLTQIQAQINQLNILITTGQAKQAENLGKQIQPKLTNLSPSRQTIYA
SINLAKSLMKLTGEGVDESAKLLATAIKQAQNLSDRQAESYALGYLAGLYEQTQQWSNAQELTQQALQLAQAINAPEIAY
QWQWQLGRILKAQGAIKPATSAYEVAFTTLKSLRSDLVAINSDIQFSFREAVEPVYREYVELLLNPGKSLEPSQQQLKQA
RQVIESLQLAELDNFFRSACLQGQIVPIEQIQQSEAAIIYPIILPDRLEVIVSLPQQTLRHYATKISQHEVEEVLDQLRQ
NLEKPFTSPEGKNLSTKVYDWLIRPLETQLSQTQVQTLVFVLDGSLRNVPMAALFDGKQYLIEKYSVALTPGLELLGPRP
LRQGQLKTLVAGLTEARHGFNSLPNVGDELKAIESEVPSQVLLNQTFTSAALRKQIDSLPFSIVHLATHGQFSSNVDETF
VLAWDKPVKVNELKDLLYNRNQNRPEPIELLVLSACETADGDKRAALGLAGVAIQAGARSTLASLWSLDDESGARLIGQF
YKELATKQVTKAEALRQAQISLLKDPDYRHPIHWASYVLLGNWL
>Mature_844_residues
MRRVFTFLLCALLGMGFTLIPQWHQVQASISQSSPLPTPQLIQQGRELYQAEQYTQAVDVWRAALKAETNILSQAMLLNY
LSLAYQELGQWQQANETINSSLNLIQQSKQTTPQAKLILAQALNTQGSWQLAQGKAEQALNTWQQATAIYTTAGNVQGKI
GSLINQAQAQQALGLYLQARKTLAGVEQGLQQQPNQKLQITGLRSLGNIFRLVGALDDSRRVLQQSLQIINQGNVSKSEL
SPTLISLGNTADAQGDKEGALTYYEQAAANATVTLTQIQAQINQLNILITTGQAKQAENLGKQIQPKLTNLSPSRQTIYA
SINLAKSLMKLTGEGVDESAKLLATAIKQAQNLSDRQAESYALGYLAGLYEQTQQWSNAQELTQQALQLAQAINAPEIAY
QWQWQLGRILKAQGAIKPATSAYEVAFTTLKSLRSDLVAINSDIQFSFREAVEPVYREYVELLLNPGKSLEPSQQQLKQA
RQVIESLQLAELDNFFRSACLQGQIVPIEQIQQSEAAIIYPIILPDRLEVIVSLPQQTLRHYATKISQHEVEEVLDQLRQ
NLEKPFTSPEGKNLSTKVYDWLIRPLETQLSQTQVQTLVFVLDGSLRNVPMAALFDGKQYLIEKYSVALTPGLELLGPRP
LRQGQLKTLVAGLTEARHGFNSLPNVGDELKAIESEVPSQVLLNQTFTSAALRKQIDSLPFSIVHLATHGQFSSNVDETF
VLAWDKPVKVNELKDLLYNRNQNRPEPIELLVLSACETADGDKRAALGLAGVAIQAGARSTLASLWSLDDESGARLIGQF
YKELATKQVTKAEALRQAQISLLKDPDYRHPIHWASYVLLGNWL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 93456; Mature: 93456

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVFTFLLCALLGMGFTLIPQWHQVQASISQSSPLPTPQLIQQGRELYQAEQYTQAVDV
CHHHHHHHHHHHHCCCCEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WRAALKAETNILSQAMLLNYLSLAYQELGQWQQANETINSSLNLIQQSKQTTPQAKLILA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
QALNTQGSWQLAQGKAEQALNTWQQATAIYTTAGNVQGKIGSLINQAQAQQALGLYLQAR
HHHCCCCCEEECCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
KTLAGVEQGLQQQPNQKLQITGLRSLGNIFRLVGALDDSRRVLQQSLQIINQGNVSKSEL
HHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHC
SPTLISLGNTADAQGDKEGALTYYEQAAANATVTLTQIQAQINQLNILITTGQAKQAENL
CCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEHHHHHHHHHHEEEEEECCCHHHHHHH
GKQIQPKLTNLSPSRQTIYASINLAKSLMKLTGEGVDESAKLLATAIKQAQNLSDRQAES
HHHCCCHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
YALGYLAGLYEQTQQWSNAQELTQQALQLAQAINAPEIAYQWQWQLGRILKAQGAIKPAT
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHCCCCCCCC
SAYEVAFTTLKSLRSDLVAINSDIQFSFREAVEPVYREYVELLLNPGKSLEPSQQQLKQA
HHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RQVIESLQLAELDNFFRSACLQGQIVPIEQIQQSEAAIIYPIILPDRLEVIVSLPQQTLR
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHH
HYATKISQHEVEEVLDQLRQNLEKPFTSPEGKNLSTKVYDWLIRPLETQLSQTQVQTLVF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLDGSLRNVPMAALFDGKQYLIEKYSVALTPGLELLGPRPLRQGQLKTLVAGLTEARHGF
HCCCCCCCCCHHHHCCCHHHHHHHHHHEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHCC
NSLPNVGDELKAIESEVPSQVLLNQTFTSAALRKQIDSLPFSIVHLATHGQFSSNVDETF
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEE
VLAWDKPVKVNELKDLLYNRNQNRPEPIELLVLSACETADGDKRAALGLAGVAIQAGARS
EEEECCCCCHHHHHHHHHCCCCCCCCHHHHHEEHHHCCCCCCCHHHHHHHHHHHHCCHHH
TLASLWSLDDESGARLIGQFYKELATKQVTKAEALRQAQISLLKDPDYRHPIHWASYVLL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
GNWL
CCCC
>Mature Secondary Structure
MRRVFTFLLCALLGMGFTLIPQWHQVQASISQSSPLPTPQLIQQGRELYQAEQYTQAVDV
CHHHHHHHHHHHHCCCCEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WRAALKAETNILSQAMLLNYLSLAYQELGQWQQANETINSSLNLIQQSKQTTPQAKLILA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
QALNTQGSWQLAQGKAEQALNTWQQATAIYTTAGNVQGKIGSLINQAQAQQALGLYLQAR
HHHCCCCCEEECCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
KTLAGVEQGLQQQPNQKLQITGLRSLGNIFRLVGALDDSRRVLQQSLQIINQGNVSKSEL
HHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHC
SPTLISLGNTADAQGDKEGALTYYEQAAANATVTLTQIQAQINQLNILITTGQAKQAENL
CCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEHHHHHHHHHHEEEEEECCCHHHHHHH
GKQIQPKLTNLSPSRQTIYASINLAKSLMKLTGEGVDESAKLLATAIKQAQNLSDRQAES
HHHCCCHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
YALGYLAGLYEQTQQWSNAQELTQQALQLAQAINAPEIAYQWQWQLGRILKAQGAIKPAT
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHCCCCCCCC
SAYEVAFTTLKSLRSDLVAINSDIQFSFREAVEPVYREYVELLLNPGKSLEPSQQQLKQA
HHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RQVIESLQLAELDNFFRSACLQGQIVPIEQIQQSEAAIIYPIILPDRLEVIVSLPQQTLR
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHH
HYATKISQHEVEEVLDQLRQNLEKPFTSPEGKNLSTKVYDWLIRPLETQLSQTQVQTLVF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLDGSLRNVPMAALFDGKQYLIEKYSVALTPGLELLGPRPLRQGQLKTLVAGLTEARHGF
HCCCCCCCCCHHHHCCCHHHHHHHHHHEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHCC
NSLPNVGDELKAIESEVPSQVLLNQTFTSAALRKQIDSLPFSIVHLATHGQFSSNVDETF
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEE
VLAWDKPVKVNELKDLLYNRNQNRPEPIELLVLSACETADGDKRAALGLAGVAIQAGARS
EEEECCCCCHHHHHHHHHCCCCCCCCHHHHHEEHHHCCCCCCCHHHHHHHHHHHHCCHHH
TLASLWSLDDESGARLIGQFYKELATKQVTKAEALRQAQISLLKDPDYRHPIHWASYVLL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
GNWL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA