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The map label for this gene is ydcM [C]

Identifier: 17228652

GI number: 17228652

Start: 1362495

End: 1363706

Strand: Direct

Name: ydcM [C]

Synonym: alr1157

Alternate gene names: 17228652

Gene position: 1362495-1363706 (Clockwise)

Preceding gene: 17228651

Following gene: 17228653

Centisome position: 21.24

GC content: 41.34

Gene sequence:

>1212_bases
ATGATTGTTTTAGAATTCAAAGCCAAAGGGAAAACAACTCAATACAATGCCATTGATGAGGCGATAAGAACAGCTCAATT
TGTTCGCAATAAGAGTATCCGTTTTTGGATGGATAACCGAGGTGTAGGGCAAAAAGAACTGTATCGAATAGCCAAGTCTT
TGAGGTCTGAATTCTCATTTGTGAAAGCTTTGAACTCTAGTGCTTGTCAAGCATCTATCGAACGGGCTTATAGCTCTATT
GCTCGTTTCTACGACAGCTGCAAAAAGTCTGTTCCGGGCAAAAAAGGATATCCAAAGTTCAAGAAAAATTCTCGCTCAGT
GGAATACAAAACGTCTGGGTGGTCACTTTCTCAGACTAGGAAACAAATAACATTCACCGACAAAAAGGGTATTGGCAAGC
TAAAACTTAAAGGAACGTGGGATTTAAGCTTCTACCAATTAGAACAGATAAAACGAGTTAGGTTAGTCCGCCGTGCTGAC
GGGTACTATGTTCAATTTTTGATTAGTGCAGACAACAAAGTAGAAACACAACCCACTGGTAAAACCATTGGTTTAGATGT
TGGACTAAAAGAGTTCTACACAGATAGCAATGGATATAGTGAACCTAACCCAAGATTTTATCGCACGGGAGAGAAACGCC
TCAAGTTTAGACAAAAGCGCGTTTCTCGCAAAAAGAAAGGCTCTACCAGCCGTAAGAGAGCTATTAATAGGTTAGGGCGA
GTACACCTCAAAATAAGTAGGCAACGTGAAGAACACGCCAAGAGAGTGGCGCGTTGCGTAATCCAGTCTAACGATTTGGT
AGCCTATGAAGATTTGAGGATCAAGAATTTAGTTAAAAATCATTGTCTCGCTAAATCTATTAATGATGCTGGTTGGTATC
AATTCAGAAAATGGTTGGAGTTTTTCGGAGTGAAGTTTGGCAGAATAACTGTTGCGGTTAACCCTGCCTATACATCGCAA
GAATGCTCTAACTGTGGCGCAATGGTCAAAAAATCTCTATCAACCAGAACTCATGCTTGTGAATGTGGTTTCGTCATGGA
TAGGGATTGGAATGCGGCTATCAATATTCTGAAATTAGCCTTGAGTACCGTAGGTCATACGGGAACTTGGGTCATAGACC
CGAACGCTTCAGGAGATTCGACCTCTACTCATGCTGGAGAAATCCTGTCTGAGCAAGTTGGGTCAAAGATTGAAGAATCT
TCGCCCTTATAG

Upstream 100 bases:

>100_bases
ACTAGCTAAAAAATTTACCAAAAAAATGGGTCTAAAGCCTCGCCCTTTTAGGGCGACTTTGATTATGTTATAATGTTTGC
GTAGAAGTTTCCCACGTAAA

Downstream 100 bases:

>100_bases
GGCGGAGAGTGTCAAAACTCATCTCTCATCTCACGATTGCCAGAGTTTAGGTTGACCAAGTTATTTATCTATAGCAAACT
AACCAATAAAAAGATATATT

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MIVLEFKAKGKTTQYNAIDEAIRTAQFVRNKSIRFWMDNRGVGQKELYRIAKSLRSEFSFVKALNSSACQASIERAYSSI
ARFYDSCKKSVPGKKGYPKFKKNSRSVEYKTSGWSLSQTRKQITFTDKKGIGKLKLKGTWDLSFYQLEQIKRVRLVRRAD
GYYVQFLISADNKVETQPTGKTIGLDVGLKEFYTDSNGYSEPNPRFYRTGEKRLKFRQKRVSRKKKGSTSRKRAINRLGR
VHLKISRQREEHAKRVARCVIQSNDLVAYEDLRIKNLVKNHCLAKSINDAGWYQFRKWLEFFGVKFGRITVAVNPAYTSQ
ECSNCGAMVKKSLSTRTHACECGFVMDRDWNAAINILKLALSTVGHTGTWVIDPNASGDSTSTHAGEILSEQVGSKIEES
SPL

Sequences:

>Translated_403_residues
MIVLEFKAKGKTTQYNAIDEAIRTAQFVRNKSIRFWMDNRGVGQKELYRIAKSLRSEFSFVKALNSSACQASIERAYSSI
ARFYDSCKKSVPGKKGYPKFKKNSRSVEYKTSGWSLSQTRKQITFTDKKGIGKLKLKGTWDLSFYQLEQIKRVRLVRRAD
GYYVQFLISADNKVETQPTGKTIGLDVGLKEFYTDSNGYSEPNPRFYRTGEKRLKFRQKRVSRKKKGSTSRKRAINRLGR
VHLKISRQREEHAKRVARCVIQSNDLVAYEDLRIKNLVKNHCLAKSINDAGWYQFRKWLEFFGVKFGRITVAVNPAYTSQ
ECSNCGAMVKKSLSTRTHACECGFVMDRDWNAAINILKLALSTVGHTGTWVIDPNASGDSTSTHAGEILSEQVGSKIEES
SPL
>Mature_403_residues
MIVLEFKAKGKTTQYNAIDEAIRTAQFVRNKSIRFWMDNRGVGQKELYRIAKSLRSEFSFVKALNSSACQASIERAYSSI
ARFYDSCKKSVPGKKGYPKFKKNSRSVEYKTSGWSLSQTRKQITFTDKKGIGKLKLKGTWDLSFYQLEQIKRVRLVRRAD
GYYVQFLISADNKVETQPTGKTIGLDVGLKEFYTDSNGYSEPNPRFYRTGEKRLKFRQKRVSRKKKGSTSRKRAINRLGR
VHLKISRQREEHAKRVARCVIQSNDLVAYEDLRIKNLVKNHCLAKSINDAGWYQFRKWLEFFGVKFGRITVAVNPAYTSQ
ECSNCGAMVKKSLSTRTHACECGFVMDRDWNAAINILKLALSTVGHTGTWVIDPNASGDSTSTHAGEILSEQVGSKIEES
SPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=323, Percent_Identity=26.0061919504644, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45921; Mature: 45921

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVLEFKAKGKTTQYNAIDEAIRTAQFVRNKSIRFWMDNRGVGQKELYRIAKSLRSEFSF
CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
VKALNSSACQASIERAYSSIARFYDSCKKSVPGKKGYPKFKKNSRSVEYKTSGWSLSQTR
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHH
KQITFTDKKGIGKLKLKGTWDLSFYQLEQIKRVRLVRRADGYYVQFLISADNKVETQPTG
HHEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEECCCCC
KTIGLDVGLKEFYTDSNGYSEPNPRFYRTGEKRLKFRQKRVSRKKKGSTSRKRAINRLGR
CEEEEECCHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VHLKISRQREEHAKRVARCVIQSNDLVAYEDLRIKNLVKNHCLAKSINDAGWYQFRKWLE
EEEEEHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
FFGVKFGRITVAVNPAYTSQECSNCGAMVKKSLSTRTHACECGFVMDRDWNAAINILKLA
HHCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCEEECCCHHHHHHHHHHH
LSTVGHTGTWVIDPNASGDSTSTHAGEILSEQVGSKIEESSPL
HHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCHHHCCCCC
>Mature Secondary Structure
MIVLEFKAKGKTTQYNAIDEAIRTAQFVRNKSIRFWMDNRGVGQKELYRIAKSLRSEFSF
CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
VKALNSSACQASIERAYSSIARFYDSCKKSVPGKKGYPKFKKNSRSVEYKTSGWSLSQTR
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHH
KQITFTDKKGIGKLKLKGTWDLSFYQLEQIKRVRLVRRADGYYVQFLISADNKVETQPTG
HHEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEECCCCC
KTIGLDVGLKEFYTDSNGYSEPNPRFYRTGEKRLKFRQKRVSRKKKGSTSRKRAINRLGR
CEEEEECCHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VHLKISRQREEHAKRVARCVIQSNDLVAYEDLRIKNLVKNHCLAKSINDAGWYQFRKWLE
EEEEEHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
FFGVKFGRITVAVNPAYTSQECSNCGAMVKKSLSTRTHACECGFVMDRDWNAAINILKLA
HHCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCEEECCCHHHHHHHHHHH
LSTVGHTGTWVIDPNASGDSTSTHAGEILSEQVGSKIEESSPL
HHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]