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The map label for this gene is opuBC [H]

Identifier: 17228469

GI number: 17228469

Start: 1136071

End: 1136979

Strand: Direct

Name: opuBC [H]

Synonym: alr0974

Alternate gene names: 17228469

Gene position: 1136071-1136979 (Clockwise)

Preceding gene: 17228468

Following gene: 17228470

Centisome position: 17.71

GC content: 36.85

Gene sequence:

>909_bases
ATGAAAAAATTTTTAATATTTTTCTTATTATCTTTGACTTTGGTGCTGGCGATCGCTAGTTGTAGTCCCAGCACGAATAC
AAATAATGGTGATATTATTGTAGCCTCTAAAGACTTTACAGAACAAGATATACTAGGTGAAATTTTATCTCAACAAATTG
AAGAAACTACTAACTTAAAAGTAGCTCGTCGTCCCCGACTAGGTGGCTCTTTTGTTTGTCATAATGCGATTCTTGCTGGC
AAGATAGATGCTTATATTGAATATACCGGCACAGCTTTTACTGGTATATTAAAACAACCAGTAATTAATAATCCTCAAGT
AGTTTACGAGAAGCTAAAACAAGCTTATAATCAACAGTTTCAACTGGAGGTAATGCCTAGCTTAGGTTTTGAAAACACAT
TTGCCATCATTGTCCGTGGTGAAGATGCTAGGCGCTATAAAATCCAAACTCTCACAGATGCGGCTCAATATACACCCCAA
TGGCGCGGTGGCTTTGGCTATGAATTTTTAGAACGAGAGGATGGTTTTCCTGGGTTAGCAAAAACTTATGCTTTAAAGTT
TACTAAACCACCGCAAATTATGGACTTGGGTTTAATATATCGTGCCTTAATGCAAAAACAAGTGGATATGGTAGCAGGTA
ACTCAACAGATGGACAAATTGCTCGTTTGGGTTTAGTAGTTCTCAAAGATGATCAACAATACTTTCCCCCTTACGAAGCA
ACACCAATTGTCAGACAAGAAACTTTAAGAAAATATCCCCAATTAAAAACAGCGATCGCTCAATTAACTGGTAGAATTTC
TGCTGATGAAATGCGACAACTCAATTATTTAGTTGAAGGCGAATTACAGGACGTAAAAGAAGTAGCAAGGGAGTTCCGTA
AATCTAAAGGACTCATCAAAAATCTCTAA

Upstream 100 bases:

>100_bases
TATTGGCTGACTTATTAATTGGATTTCTAGAGCAAAAATTAAAAGTTAATTCATAATTAAGTTTTAGAAAAAGTATTATC
TTTGTTTAAGTTAATTTATT

Downstream 100 bases:

>100_bases
GCGAAATTTCAGCATCTTTGTGTGATAGTTATGAAACTCTTTATCCCAGTAACAGTTATCGGATTGTGCCTTTCTAGTAG
CCAAGTTCTGGCTCAAACTT

Product: binding protein of ABC transporter component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKKFLIFFLLSLTLVLAIASCSPSTNTNNGDIIVASKDFTEQDILGEILSQQIEETTNLKVARRPRLGGSFVCHNAILAG
KIDAYIEYTGTAFTGILKQPVINNPQVVYEKLKQAYNQQFQLEVMPSLGFENTFAIIVRGEDARRYKIQTLTDAAQYTPQ
WRGGFGYEFLEREDGFPGLAKTYALKFTKPPQIMDLGLIYRALMQKQVDMVAGNSTDGQIARLGLVVLKDDQQYFPPYEA
TPIVRQETLRKYPQLKTAIAQLTGRISADEMRQLNYLVEGELQDVKEVAREFRKSKGLIKNL

Sequences:

>Translated_302_residues
MKKFLIFFLLSLTLVLAIASCSPSTNTNNGDIIVASKDFTEQDILGEILSQQIEETTNLKVARRPRLGGSFVCHNAILAG
KIDAYIEYTGTAFTGILKQPVINNPQVVYEKLKQAYNQQFQLEVMPSLGFENTFAIIVRGEDARRYKIQTLTDAAQYTPQ
WRGGFGYEFLEREDGFPGLAKTYALKFTKPPQIMDLGLIYRALMQKQVDMVAGNSTDGQIARLGLVVLKDDQQYFPPYEA
TPIVRQETLRKYPQLKTAIAQLTGRISADEMRQLNYLVEGELQDVKEVAREFRKSKGLIKNL
>Mature_302_residues
MKKFLIFFLLSLTLVLAIASCSPSTNTNNGDIIVASKDFTEQDILGEILSQQIEETTNLKVARRPRLGGSFVCHNAILAG
KIDAYIEYTGTAFTGILKQPVINNPQVVYEKLKQAYNQQFQLEVMPSLGFENTFAIIVRGEDARRYKIQTLTDAAQYTPQ
WRGGFGYEFLEREDGFPGLAKTYALKFTKPPQIMDLGLIYRALMQKQVDMVAGNSTDGQIARLGLVVLKDDQQYFPPYEA
TPIVRQETLRKYPQLKTAIAQLTGRISADEMRQLNYLVEGELQDVKEVAREFRKSKGLIKNL

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=282, Percent_Identity=31.9148936170213, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 34092; Mature: 34092

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLIFFLLSLTLVLAIASCSPSTNTNNGDIIVASKDFTEQDILGEILSQQIEETTNLK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCE
VARRPRLGGSFVCHNAILAGKIDAYIEYTGTAFTGILKQPVINNPQVVYEKLKQAYNQQF
EEECCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCE
QLEVMPSLGFENTFAIIVRGEDARRYKIQTLTDAAQYTPQWRGGFGYEFLEREDGFPGLA
EEEEECCCCCCCEEEEEEECCCCCEEEEHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHH
KTYALKFTKPPQIMDLGLIYRALMQKQVDMVAGNSTDGQIARLGLVVLKDDQQYFPPYEA
HHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCC
TPIVRQETLRKYPQLKTAIAQLTGRISADEMRQLNYLVEGELQDVKEVAREFRKSKGLIK
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHC
NL
CC
>Mature Secondary Structure
MKKFLIFFLLSLTLVLAIASCSPSTNTNNGDIIVASKDFTEQDILGEILSQQIEETTNLK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCE
VARRPRLGGSFVCHNAILAGKIDAYIEYTGTAFTGILKQPVINNPQVVYEKLKQAYNQQF
EEECCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCE
QLEVMPSLGFENTFAIIVRGEDARRYKIQTLTDAAQYTPQWRGGFGYEFLEREDGFPGLA
EEEEECCCCCCCEEEEEEECCCCCEEEEHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHH
KTYALKFTKPPQIMDLGLIYRALMQKQVDMVAGNSTDGQIARLGLVVLKDDQQYFPPYEA
HHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCC
TPIVRQETLRKYPQLKTAIAQLTGRISADEMRQLNYLVEGELQDVKEVAREFRKSKGLIK
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHC
NL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]