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The map label for this gene is opuCB [H]

Identifier: 17228468

GI number: 17228468

Start: 1135394

End: 1136026

Strand: Direct

Name: opuCB [H]

Synonym: alr0973

Alternate gene names: 17228468

Gene position: 1135394-1136026 (Clockwise)

Preceding gene: 17228467

Following gene: 17228469

Centisome position: 17.7

GC content: 39.18

Gene sequence:

>633_bases
ATGAAAGATTTATTCTTAATTAAGTATGCTCCAGAAATCATACAACACACACTAGAACATTTATTTTTAGTAGGTATTGC
TATTAGTATTTCCATTATTATTGGTATTCCTTTAGGAATTTTAATCACGCGCCAAAAACAACTGCGGCAACCGATTTTAG
GTATAGCTAATATTCTCCAAACTATTCCCAGTTTGGCATTATTTGGCTTACTCATCCCCGTCCCTGTAATTGGTGGTATT
GGCGCGACCCCAGCAATTGTTGCCCTGGCTTTATATTCTCTACTGCCACTAATTCGTAATACTTATACAGGGATTTCTGG
AGTAGATCCGGCGATTAGAGAAGCTGGACGGGGAATGGGCATGACTGATAGACAATTGTTATTACAGGTAGAAATTCCCT
TAGCAATGTCAGTTATTTTGGCTGGGGTGCGAGTAGCGACAGTTATCTCTATTGGAATTGCAACTATTGCAGCTGCCATT
GGTGCTGGTGGTTTGGGCGTGTTTATTTTTCGAGGAATTGCTGTGGTCAATGATCAATTAATTTTAGCTGGGGCAGTTCC
TGCGGCTGCAATTGCTCTATTGGCTGACTTATTAATTGGATTTCTAGAGCAAAAATTAAAAGTTAATTCATAA

Upstream 100 bases:

>100_bases
TCTACATTCTCTACAAACTAGCTAATTGAACAATTCAAAATTCAAAACTCAAAAAAAATTCAAAACTCAAAATTGATAAT
AGCTCCCCAAACCCCAATTC

Downstream 100 bases:

>100_bases
TTAAGTTTTAGAAAAAGTATTATCTTTGTTTAAGTTAATTTATTATGAAAAAATTTTTAATATTTTTCTTATTATCTTTG
ACTTTGGTGCTGGCGATCGC

Product: permease protein of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MKDLFLIKYAPEIIQHTLEHLFLVGIAISISIIIGIPLGILITRQKQLRQPILGIANILQTIPSLALFGLLIPVPVIGGI
GATPAIVALALYSLLPLIRNTYTGISGVDPAIREAGRGMGMTDRQLLLQVEIPLAMSVILAGVRVATVISIGIATIAAAI
GAGGLGVFIFRGIAVVNDQLILAGAVPAAAIALLADLLIGFLEQKLKVNS

Sequences:

>Translated_210_residues
MKDLFLIKYAPEIIQHTLEHLFLVGIAISISIIIGIPLGILITRQKQLRQPILGIANILQTIPSLALFGLLIPVPVIGGI
GATPAIVALALYSLLPLIRNTYTGISGVDPAIREAGRGMGMTDRQLLLQVEIPLAMSVILAGVRVATVISIGIATIAAAI
GAGGLGVFIFRGIAVVNDQLILAGAVPAAAIALLADLLIGFLEQKLKVNS
>Mature_210_residues
MKDLFLIKYAPEIIQHTLEHLFLVGIAISISIIIGIPLGILITRQKQLRQPILGIANILQTIPSLALFGLLIPVPVIGGI
GATPAIVALALYSLLPLIRNTYTGISGVDPAIREAGRGMGMTDRQLLLQVEIPLAMSVILAGVRVATVISIGIATIAAAI
GAGGLGVFIFRGIAVVNDQLILAGAVPAAAIALLADLLIGFLEQKLKVNS

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=226, Percent_Identity=38.9380530973451, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788449, Length=195, Percent_Identity=42.0512820512821, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789033, Length=168, Percent_Identity=35.7142857142857, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 21871; Mature: 21871

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLFLIKYAPEIIQHTLEHLFLVGIAISISIIIGIPLGILITRQKQLRQPILGIANILQ
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIPSLALFGLLIPVPVIGGIGATPAIVALALYSLLPLIRNTYTGISGVDPAIREAGRGMG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCC
MTDRQLLLQVEIPLAMSVILAGVRVATVISIGIATIAAAIGAGGLGVFIFRGIAVVNDQL
CCHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCE
ILAGAVPAAAIALLADLLIGFLEQKLKVNS
EEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDLFLIKYAPEIIQHTLEHLFLVGIAISISIIIGIPLGILITRQKQLRQPILGIANILQ
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIPSLALFGLLIPVPVIGGIGATPAIVALALYSLLPLIRNTYTGISGVDPAIREAGRGMG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCC
MTDRQLLLQVEIPLAMSVILAGVRVATVISIGIATIAAAIGAGGLGVFIFRGIAVVNDQL
CCHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCE
ILAGAVPAAAIALLADLLIGFLEQKLKVNS
EEEHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]