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The map label for this gene is ybeF [H]

Identifier: 16767021

GI number: 16767021

Start: 3928434

End: 3929336

Strand: Reverse

Name: ybeF [H]

Synonym: STM3736

Alternate gene names: 16767021

Gene position: 3929336-3928434 (Counterclockwise)

Preceding gene: 16767024

Following gene: 16767019

Centisome position: 80.89

GC content: 52.71

Gene sequence:

>903_bases
ATGAACTTGCTGCAAATGGATATGAACCTGTTAAAAGTACTGTATGTGCTGCTGGAGACGAGCTCTACGGGGAAAACGGC
GCAAAAGCTGGCTTTGTCGCCTTCTGCGGTAAGTCATGCGTTAATGAGATTGCGCGATGCGCTAAACGACCCGTTGTTTC
GACGGGAAGGGAACCGCCAGATTCCTACGCCTTATGCGCAGGCGCTGCGTGACAAATTGGCGCCTGTGTTTGTTTCGCTT
AATGAGGAGCTGTTTGGCGATAAAGAGAACGGCTCCCGTTGTTTTCGGGTGGTACTTCCTCCCGCATTGAACGCGCTGCT
TACGCCAGTTCTCGCAGAGAAAGGTCATCTTCATCAGGCGGTGATCGAGTGCCTTCCTTTTGCCCGCCGACCCTGGCGTG
ATGAACTGTTGGATAGCTCGGTTGATTTGGTGCTGGCAATTGGCGACCATCAAAAGCAGGTCAGCGCTCTGCATTACGAG
CGGGTGGGGACTACGCGTTTGATCGCGGTTTATGGCGCGCCATTGCGTTCACGTCTGGAGAATGCCACAGCGTTGAATTT
TGCTGATCTACAGCATTATCAACACATTTACTGTTTGCCGTGGACAAAAGAGAACAACGAACTGGACAGGCAGCAGGCTC
GTGCCGGGTTTGAACGTCCGCTGGCGTTTGTTTGTCATGATTACAGTCAACTTGCGCCTGCTGTCCAGTCGGCGCCGCTA
ATGGCGATTGTACCGCGCCCCTGGTATGAAAATTTATCCGATAAGCGCGGTCTTTTTGTCCTGCCGCTTGCCGGGGAGCA
GGCGGAAGGCGCTATTTTTATGCAGTATCGGGCTTCAACGGTAGAGTGGAAGCGACGCCTTATCGACGCTATTCGCCGGA
AATTAAAAACGTACTACCGATAA

Upstream 100 bases:

>100_bases
TACAAGGAATAATGCATAGCGATTCATAATGTTCTCCTGATTGAAGCGCCCGCAGTATACCTGGCAGTAATTTAGCCAGG
TTCAATAAGAGAGACGTTTA

Downstream 100 bases:

>100_bases
ACGCGAGAGCCCGCATAAGGCGGGCTCTGTGACATATTGAGCGCCAGAATTATTCAATATTCTGGATTTGCTCGCGCATT
TGCTCGATCAACACTTTTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALNDPLFRREGNRQIPTPYAQALRDKLAPVFVSL
NEELFGDKENGSRCFRVVLPPALNALLTPVLAEKGHLHQAVIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYE
RVGTTRLIAVYGAPLRSRLENATALNFADLQHYQHIYCLPWTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPL
MAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYR

Sequences:

>Translated_300_residues
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALNDPLFRREGNRQIPTPYAQALRDKLAPVFVSL
NEELFGDKENGSRCFRVVLPPALNALLTPVLAEKGHLHQAVIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYE
RVGTTRLIAVYGAPLRSRLENATALNFADLQHYQHIYCLPWTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPL
MAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYR
>Mature_300_residues
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALNDPLFRREGNRQIPTPYAQALRDKLAPVFVSL
NEELFGDKENGSRCFRVVLPPALNALLTPVLAEKGHLHQAVIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYE
RVGTTRLIAVYGAPLRSRLENATALNFADLQHYQHIYCLPWTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPL
MAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081766, Length=300, Percent_Identity=26, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34143; Mature: 34143

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALNDPLFRREGNRQ
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCCCC
IPTPYAQALRDKLAPVFVSLNEELFGDKENGSRCFRVVLPPALNALLTPVLAEKGHLHQA
CCCHHHHHHHHHHHHHEEECCHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHH
VIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYERVGTTRLIAVYGAPLRSRLE
HHHHHHCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCHHHHHHH
NATALNFADLQHYQHIYCLPWTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPL
HHHHCCHHHHHHCCEEEEEECCCCCCHHHHHHHHCCHHCCHHHHHCCHHHHHHHHHCCCE
MAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYR
EEEECCCHHHCCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALNDPLFRREGNRQ
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCCCC
IPTPYAQALRDKLAPVFVSLNEELFGDKENGSRCFRVVLPPALNALLTPVLAEKGHLHQA
CCCHHHHHHHHHHHHHEEECCHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHH
VIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYERVGTTRLIAVYGAPLRSRLE
HHHHHHCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCHHHHHHH
NATALNFADLQHYQHIYCLPWTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPL
HHHHCCHHHHHHCCEEEEEECCCCCCHHHHHHHHCCHHCCHHHHHCCHHHHHHHHHCCCE
MAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYR
EEEECCCHHHCCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444795; 8905232; 9278503 [H]