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The map label for this gene is rfaQ [H]

Identifier: 16767008

GI number: 16767008

Start: 3917859

End: 3918893

Strand: Reverse

Name: rfaQ [H]

Synonym: STM3723

Alternate gene names: 16767008

Gene position: 3918893-3917859 (Counterclockwise)

Preceding gene: 16767011

Following gene: 16767007

Centisome position: 80.68

GC content: 48.21

Gene sequence:

>1035_bases
ATGCGTTTTCATGGAGACATGTTACTTACCACCCCTGTCATCAGCACGCTGAAGCAGAATTATCCCGATGCAAAAATCGA
TGTGCTTCTTTACCAGAACACCATACCGATATTGTCGGAAAATCCGGAGATTAATGCACTCTACGGCATCAGTAACAAAG
GCGCAGGAACAAAAGAGAAGATCAAAAACGCGCTATCGCTAATCAAAAAATTGCGTGCTAACTCGTATGATCTGGTCGTC
AATCTCACCGATCAGTGGAGCGTGGCGCTTATTGTGCGTTTTTTAAACGCAAAAATAAAAATCTCGCAGGATTTCGGTAA
TCGTCAGTCTGCTCTATGGAAAAAGAGCTTTACGCATTTAGTACCTTATGCGGGAGAACATGCTGTTGAGCGCACATTAT
CCGCGCTAAAGCCGTTAGCGCTAAAACAGTATGTCACGGAAACCACCATGAGCTATCGCCCGGAACATTGGGAAAACATG
CGACAACAGCTCAAACAACTTGGTGTGACCCGACAATATGTTGTTATTCAGCCTACGGCACGGCAGCTATTTAAGTGCTG
GGATAATGATAAATTCTCGCAGGTTATTGATGCCGTGCAGCGCCGCGGTTATCAAGTTGTACTGACGTCAGGCCCGGCCG
CAGACGAGATGGCCTGCGTGGATGCTATTGCACGCGGCTGTGAGACAAAACCGGTTACTGGTCTGGCGGGTAAAACTCGC
TTTCCTGAATTGGGTGCGTTGATTGACCATGCGGATCTCTTTATCGGCGTTGATTCGGCCCCCGGTCATATTGCCGCAGC
AGTCAAAACGCCGGTCATTTGTCTTTTTGGCGCGACGGATCATGTATTCTGGCGTCCCTGGACCGACGACATCATTCAGT
TTTGGGCAGGAAATTATCAGCCGATGCCTGAACGGCATGAGCTTGATCGTAATAAAAAATACCTTTCCGTTATTCCGGCT
GAAGATGTTATCGCCGCGACGGAAAAAATGCTGCCGCATGAGGCACGCACCATAGATTTGGACAGCCTGCTATGA

Upstream 100 bases:

>100_bases
CCTGGGGCGGTAGCGTGCTTTTTTCTGCTTATTTATCCGGACAATTTCAACCAAAGAGTCGCTTGTGGAAAAGCCATTTC
GAAGAATTCTGATTATAAAA

Downstream 100 bases:

>100_bases
GAGTTGCCTTTTGCTTATATAAATATTTTCCTTTTGGCGGTCTGCAGCGTGATTTTATGCGCATTGCCCAAACCGTGGCG
GCGCGAGGGCATCAGGTTCG

Product: lipopolysaccharide core biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALYGISNKGAGTKEKIKNALSLIKKLRANSYDLVV
NLTDQWSVALIVRFLNAKIKISQDFGNRQSALWKKSFTHLVPYAGEHAVERTLSALKPLALKQYVTETTMSYRPEHWENM
RQQLKQLGVTRQYVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCETKPVTGLAGKTR
FPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWTDDIIQFWAGNYQPMPERHELDRNKKYLSVIPA
EDVIAATEKMLPHEARTIDLDSLL

Sequences:

>Translated_344_residues
MRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALYGISNKGAGTKEKIKNALSLIKKLRANSYDLVV
NLTDQWSVALIVRFLNAKIKISQDFGNRQSALWKKSFTHLVPYAGEHAVERTLSALKPLALKQYVTETTMSYRPEHWENM
RQQLKQLGVTRQYVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCETKPVTGLAGKTR
FPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWTDDIIQFWAGNYQPMPERHELDRNKKYLSVIPA
EDVIAATEKMLPHEARTIDLDSLL
>Mature_344_residues
MRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALYGISNKGAGTKEKIKNALSLIKKLRANSYDLVV
NLTDQWSVALIVRFLNAKIKISQDFGNRQSALWKKSFTHLVPYAGEHAVERTLSALKPLALKQYVTETTMSYRPEHWENM
RQQLKQLGVTRQYVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCETKPVTGLAGKTR
FPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWTDDIIQFWAGNYQPMPERHELDRNKKYLSVIPA
EDVIAATEKMLPHEARTIDLDSLL

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=344, Percent_Identity=78.1976744186046, Blast_Score=568, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 38715; Mature: 38715

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALYGISNKGAGTKEK
CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHH
IKNALSLIKKLRANSYDLVVNLTDQWSVALIVRFLNAKIKISQDFGNRQSALWKKSFTHL
HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
VPYAGEHAVERTLSALKPLALKQYVTETTMSYRPEHWENMRQQLKQLGVTRQYVVIQPTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHH
RQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCETKPVTGLAGKTR
HHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
FPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWTDDIIQFWAGNYQ
CCHHHHHHCCCEEEEEECCCCCCEEEECCCCEEEEECCCCCEEECCCHHHHHHHHCCCCC
PMPERHELDRNKKYLSVIPAEDVIAATEKMLPHEARTIDLDSLL
CCCCHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCEECHHHCC
>Mature Secondary Structure
MRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALYGISNKGAGTKEK
CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHH
IKNALSLIKKLRANSYDLVVNLTDQWSVALIVRFLNAKIKISQDFGNRQSALWKKSFTHL
HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
VPYAGEHAVERTLSALKPLALKQYVTETTMSYRPEHWENMRQQLKQLGVTRQYVVIQPTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHH
RQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCETKPVTGLAGKTR
HHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
FPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWTDDIIQFWAGNYQ
CCHHHHHHCCCEEEEEECCCCCCEEEECCCCEEEEECCCCCEEECCCHHHHHHHHCCCCC
PMPERHELDRNKKYLSVIPAEDVIAATEKMLPHEARTIDLDSLL
CCCCHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCEECHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1732225; 1447141; 8041620; 9278503 [H]