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The map label for this gene is allS [H]

Identifier: 16766322

GI number: 16766322

Start: 3180959

End: 3181822

Strand: Reverse

Name: allS [H]

Synonym: STM3020

Alternate gene names: 16766322

Gene position: 3181822-3180959 (Counterclockwise)

Preceding gene: 16766325

Following gene: 16766321

Centisome position: 65.5

GC content: 54.51

Gene sequence:

>864_bases
ATGCGTTACTCACCTGAAGCTTTAATAGCATTTGTTGAGACCGTCTCTTGCGGTTCGTTTTCTGCGGCGGCGCGCCGCCT
GCGTAAAAGCCAGTCCACCATTAGTATCGCCATTGCGCATCTGGAGGCGGATCTGGGATTTTCATTATTTGATCGATCTT
CGCGCCAGCCCGTTCTGACCGAAGAAGGAAAACGGGTGCTTAGCTATGTTCAGGCTATTTTATCGGCGAGCGACCGTCTG
GATGAGGTGGCGCTGACGTTATCCGGCGAGACGGAGGCAAGACTCACGTTCGTCCTCTCTGATACCCTGCACCCTGACAG
TCTGGAAGAGTTAATGGCGCAGTTTGATCGTCAATTTCCGCATACCGAGTTTGAATGCTTGATCGGAGAAAATGATGATG
TCATCGACCTGCTGCAAAAAGGGCGTGCCCAGATAGGCCTGATTGAAGCGCGTGATGACTATCCCACAGACATTGGCGCG
GCGCGTCTGCCTGTTCAAAGCTGGATGGGGGTTTATGTGGCGACCACGCATCCGTTGGCGTCACAGACGAACCTGCAATG
GGAGCAACTGCATACCTGGCGCGAGCTGCGTCTGAATACCTATCTTGACTCTAACGCCAACATTACGCGCGGCCCGGCCT
GGTCAGCGCCAAACTATTTATTACTGTTGAGCATGGCGGTTCAGGGATTTGGCTGGTGCGTATTGCCCTGCGCGCTGGTG
GAAGAGTTTGCGGCGGAAAAACCGCTGGCGCAGCTGGATGTTCCTGGCTGGCCGAGGGCGATTGCTATTGATTTGCTGTG
GAACAAGAAAACGCCGCCCGGAACGGCGGGGAACTGGCTTCGCTACCATTTGCAGCAGAAATAA

Upstream 100 bases:

>100_bases
CGAAAAAACCTTACTCTTAATCAAGCTAAAGAAATTTCCGCTATTTTATCGTTTAATGTGATACCTAAAAGATAACATCC
ATCGATAAAGTAGATAGGTT

Downstream 100 bases:

>100_bases
GCTGCGTCACCGTCAAATCAGCGTCATTTCCTTTGTGATAAAACTCACTTTTTTTAAACAATCAAGAAAACTAATTTTAA
CAATGCTCTACTATGGCGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MRYSPEALIAFVETVSCGSFSAAARRLRKSQSTISIAIAHLEADLGFSLFDRSSRQPVLTEEGKRVLSYVQAILSASDRL
DEVALTLSGETEARLTFVLSDTLHPDSLEELMAQFDRQFPHTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGA
ARLPVQSWMGVYVATTHPLASQTNLQWEQLHTWRELRLNTYLDSNANITRGPAWSAPNYLLLLSMAVQGFGWCVLPCALV
EEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHLQQK

Sequences:

>Translated_287_residues
MRYSPEALIAFVETVSCGSFSAAARRLRKSQSTISIAIAHLEADLGFSLFDRSSRQPVLTEEGKRVLSYVQAILSASDRL
DEVALTLSGETEARLTFVLSDTLHPDSLEELMAQFDRQFPHTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGA
ARLPVQSWMGVYVATTHPLASQTNLQWEQLHTWRELRLNTYLDSNANITRGPAWSAPNYLLLLSMAVQGFGWCVLPCALV
EEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHLQQK
>Mature_287_residues
MRYSPEALIAFVETVSCGSFSAAARRLRKSQSTISIAIAHLEADLGFSLFDRSSRQPVLTEEGKRVLSYVQAILSASDRL
DEVALTLSGETEARLTFVLSDTLHPDSLEELMAQFDRQFPHTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGA
ARLPVQSWMGVYVATTHPLASQTNLQWEQLHTWRELRLNTYLDSNANITRGPAWSAPNYLLLLSMAVQGFGWCVLPCALV
EEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHLQQK

Specific function: Positive regulator essential for the expression of AllD operon. Binds to the AllD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=281, Percent_Identity=25.6227758007117, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082024, Length=272, Percent_Identity=26.1029411764706, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=146, Percent_Identity=34.9315068493151, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786508, Length=297, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788296, Length=177, Percent_Identity=28.8135593220339, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=181, Percent_Identity=28.1767955801105, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32084; Mature: 32084

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSPEALIAFVETVSCGSFSAAARRLRKSQSTISIAIAHLEADLGFSLFDRSSRQPVLT
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEHHHHCCHHHHCCCCCCCCHH
EEGKRVLSYVQAILSASDRLDEVALTLSGETEARLTFVLSDTLHPDSLEELMAQFDRQFP
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC
HTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGAARLPVQSWMGVYVATTHPLA
CCCEEEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCHHCCHHHHCCEEEEECCCCC
SQTNLQWEQLHTWRELRLNTYLDSNANITRGPAWSAPNYLLLLSMAVQGFGWCVLPCALV
CCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
EEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHLQQK
HHHHHCCCCHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHEECCC
>Mature Secondary Structure
MRYSPEALIAFVETVSCGSFSAAARRLRKSQSTISIAIAHLEADLGFSLFDRSSRQPVLT
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEHHHHCCHHHHCCCCCCCCHH
EEGKRVLSYVQAILSASDRLDEVALTLSGETEARLTFVLSDTLHPDSLEELMAQFDRQFP
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC
HTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGAARLPVQSWMGVYVATTHPLA
CCCEEEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCHHCCHHHHCCEEEEECCCCC
SQTNLQWEQLHTWRELRLNTYLDSNANITRGPAWSAPNYLLLLSMAVQGFGWCVLPCALV
CCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
EEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHLQQK
HHHHHCCCCHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]