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The map label for this gene is 16766214

Identifier: 16766214

GI number: 16766214

Start: 3049599

End: 3050120

Strand: Reverse

Name: 16766214

Synonym: STM2908

Alternate gene names: NA

Gene position: 3050120-3049599 (Counterclockwise)

Preceding gene: 16766216

Following gene: 16766209

Centisome position: 62.79

GC content: 43.49

Gene sequence:

>522_bases
TTGAAAACAACTCTCAGCCAGCCTTTCATTATCAACAAGTTAAGTATCAATGTTAAGCCTGCACTCAGTCGCTCTGGAAA
AATCGTTTTCGAAGCTAACCCAGCTCAAAAACTCTACACTGTTTTCGATGACCACAGAGAAGCTCCTGCTGGTTTCGGGG
TAAAAGCCAGTTTGACGAAAAAAACCTACGTAATCCAGCGAAGAGTAGCCTCGTCAGATCGTAATGTCAGTGAGGGTAGG
AAGCCAAGTTCTGTCTTGAAAGTAAAAGTTGGAAATGTGTTCGATTTTCCAAATATTGACGAAACAAGGCAAGCTGCCAG
GCAATTAGTTCAGACCATGCTCGCAACAAAGAGAAATTTCAACAAAATTAAGAGGGAAACGGATGCTTCCGAACTCGAGA
CTGTAATCAAGATTGTGTTGCATGAAGGCAAGCCGATCCATTTCGCCACCACGGTTATTGCGTTTTCTTCCGATAGGTAT
CTGGAGCTGTGCGATCTTTACTCTTCTCAGGCGATCGAGTAA

Upstream 100 bases:

>100_bases
TTATAAACTCACATAAACCCATAAATTTGTAGCTCACCTGTAGCCTAAAATGTGACAGGTTACATTCTCATCATTCCTGG
ACTACAACAGGGGTGATACT

Downstream 100 bases:

>100_bases
CTACCTGCGTCGGATTACGGCTTCGTTTTTTTGGCCTGCGATCTTAATGCTGAAATGGGCAGAAAAACGCGAAATTTAGA
CGCTATTACGAATGGGCAAT

Product: cytoplasmic protein

Products: NA

Alternate protein names: Integrase; Cytoplasmic Protein; Integrase/Recombinase; Integrase Family Protein

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MKTTLSQPFIINKLSINVKPALSRSGKIVFEANPAQKLYTVFDDHREAPAGFGVKASLTKKTYVIQRRVASSDRNVSEGR
KPSSVLKVKVGNVFDFPNIDETRQAARQLVQTMLATKRNFNKIKRETDASELETVIKIVLHEGKPIHFATTVIAFSSDRY
LELCDLYSSQAIE

Sequences:

>Translated_173_residues
MKTTLSQPFIINKLSINVKPALSRSGKIVFEANPAQKLYTVFDDHREAPAGFGVKASLTKKTYVIQRRVASSDRNVSEGR
KPSSVLKVKVGNVFDFPNIDETRQAARQLVQTMLATKRNFNKIKRETDASELETVIKIVLHEGKPIHFATTVIAFSSDRY
LELCDLYSSQAIE
>Mature_173_residues
MKTTLSQPFIINKLSINVKPALSRSGKIVFEANPAQKLYTVFDDHREAPAGFGVKASLTKKTYVIQRRVASSDRNVSEGR
KPSSVLKVKVGNVFDFPNIDETRQAARQLVQTMLATKRNFNKIKRETDASELETVIKIVLHEGKPIHFATTVIAFSSDRY
LELCDLYSSQAIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19416; Mature: 19416

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTLSQPFIINKLSINVKPALSRSGKIVFEANPAQKLYTVFDDHREAPAGFGVKASLTK
CCCCCCCCEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEEEHHHH
KTYVIQRRVASSDRNVSEGRKPSSVLKVKVGNVFDFPNIDETRQAARQLVQTMLATKRNF
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHH
NKIKRETDASELETVIKIVLHEGKPIHFATTVIAFSSDRYLELCDLYSSQAIE
HHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTTLSQPFIINKLSINVKPALSRSGKIVFEANPAQKLYTVFDDHREAPAGFGVKASLTK
CCCCCCCCEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEEEHHHH
KTYVIQRRVASSDRNVSEGRKPSSVLKVKVGNVFDFPNIDETRQAARQLVQTMLATKRNF
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHH
NKIKRETDASELETVIKIVLHEGKPIHFATTVIAFSSDRYLELCDLYSSQAIE
HHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA