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The map label for this gene is ygaA [H]

Identifier: 16766145

GI number: 16766145

Start: 2983365

End: 2984885

Strand: Reverse

Name: ygaA [H]

Synonym: STM2839

Alternate gene names: 16766145

Gene position: 2984885-2983365 (Counterclockwise)

Preceding gene: 16766148

Following gene: 16766137

Centisome position: 61.45

GC content: 59.37

Gene sequence:

>1521_bases
ATGAGTTTTTCCGTGGAGGTATTGGCGGGCATCGCCATTGAGTTACAACGCGGCATTGGGCATCAGGATCGTTTTCAGCG
GCTGATTACTACGCTGCGTCAGGTGCTGGCGTGCGACGCCTCGGCGCTGCTGCGCTATGAATCACGACAATTTATTCCAC
TGGCGATTGATGGCCTGGCGCAGGACGTCCTCGGCAGACGTTTTACCCTGGAAGGGCATCCGCGCCTGGAAGCCATCGCC
CGCGCGGGGGACGTGGTGCGTTTTCCGGCTGATAGCGATTTACCCGATCCGTATGACGGGTTAATTCCCGGACAGGAAAG
CCTGAAAGTCCACGCCTGTGTTGGTCTGCCGCTGTTTGCCGGACAGAACCTCATCGGTGCGCTGACCCTTGATGCTATGA
CGCCGGAGCAGTTCGAGGTATTTAGCGATGAAGAACTACGGCTTGTCGCCGCGCTGGCCGCCGGGGCATTGAGTAATGCG
CTGTTAATTGAACAACTGGAAAGCCAGAACATGCTGCCGGGGTCGTCAGGCGTGTTTGAACCGATAAAAGAGACGCACAT
GATCGGCCTGTCGCCGGCGATGACGCAGTTGAAAAAAGAGATCGAGATTGTGGCGGGCTCCGATCTTAACGTGCTGATCG
GCGGTGAAACGGGGACCGGTAAAGAGCTGGTGGCGAAAGCTATTCACCAGGGCTCCCCCAGAGCGGTTAATCCGCTGGTC
TATCTCAACTGCGCCGCGCTGCCGGAAAGCGTGGCGGAGAGCGAGTTGTTTGGTCATGTAAAAGGGGCTTTTACCGGGGC
TATCAGTAATCGTAGCGGTAAGTTCGAAATGGCGGATAACGGTACGCTGTTTCTGGATGAGATTGGCGAACTGTCGCTGG
CGCTACAGGCTAAGCTACTTCGCGTGTTGCAGTATGGCGATATTCAGCGCGTCGGCGACGATCGTAGCCTGCGCGTGGAC
GTGCGGGTGTTGGCGGCGACCAACCGTGACCTGCGTGAAGAGGTGCTGGCAGGGCGTTTTCGCGCCGATCTGTTCCATCG
CCTGAGCGTTTTCCCGCTCTTTGTGCCGCCGCTGCGCGAGCGCGGCGATGATGTGGTGCTGCTGGCGGGCTATTTTTGCG
AGCAGTGCCGACTGCGGCTGGGGCTGTCCCGCGTGGTACTGAGTCCCGGCGCACGTCGCCATTTGCTCAACTATGGCTGG
CCGGGCAACGTCCGGGAGCTGGAACATGCCATTCACCGTGCGGTTGTACTGGCGAGAGCGACCCGGGCAGGGGATGAGGT
GATACTGGAGGCACAGCATTTTGCCTTGTCAGAGGACGTTTTACCCGCGCCGCCTGCGGAAAGCTTTCTGGCGCTGCCGA
CTTGCCGCAATTTGCGCGAATCGACGGAGAACTTCCAGCGAGAGATGATTCGCCAGGCGCTGGCGCAAAATAATCATAAC
TGGGCGGCCAGCGCGCGGGCGCTGGAAACCGACGTCGCCAACCTGCATCGGCTGGCGAAGCGTCTGGGACTGAAGGATTA
G

Upstream 100 bases:

>100_bases
TTGAGTTATATTTGTTTTGTATTTTTGATGTAGTCAAAAAGACTATAAATGATGCTGTCAATATGACACTATAGGTTGTC
AAAATGACAATGAGGTAACC

Downstream 100 bases:

>100_bases
ATAATCCCCGCCTGGTAGAAATCCTGCAGGTTAATGGCGCCGGTGAGTTTGCCGTTTTCATCGACCACTGGCGCGGCGGT
AATTTTGCGTTTCATCAGGA

Product: anaerobic nitric oxide reductase transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MSFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALLRYESRQFIPLAIDGLAQDVLGRRFTLEGHPRLEAIA
RAGDVVRFPADSDLPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNA
LLIEQLESQNMLPGSSGVFEPIKETHMIGLSPAMTQLKKEIEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLV
YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVD
VRVLAATNRDLREEVLAGRFRADLFHRLSVFPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPGARRHLLNYGW
PGNVRELEHAIHRAVVLARATRAGDEVILEAQHFALSEDVLPAPPAESFLALPTCRNLRESTENFQREMIRQALAQNNHN
WAASARALETDVANLHRLAKRLGLKD

Sequences:

>Translated_506_residues
MSFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALLRYESRQFIPLAIDGLAQDVLGRRFTLEGHPRLEAIA
RAGDVVRFPADSDLPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNA
LLIEQLESQNMLPGSSGVFEPIKETHMIGLSPAMTQLKKEIEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLV
YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVD
VRVLAATNRDLREEVLAGRFRADLFHRLSVFPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPGARRHLLNYGW
PGNVRELEHAIHRAVVLARATRAGDEVILEAQHFALSEDVLPAPPAESFLALPTCRNLRESTENFQREMIRQALAQNNHN
WAASARALETDVANLHRLAKRLGLKD
>Mature_505_residues
SFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALLRYESRQFIPLAIDGLAQDVLGRRFTLEGHPRLEAIAR
AGDVVRFPADSDLPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNAL
LIEQLESQNMLPGSSGVFEPIKETHMIGLSPAMTQLKKEIEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLVY
LNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDV
RVLAATNRDLREEVLAGRFRADLFHRLSVFPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPGARRHLLNYGWP
GNVRELEHAIHRAVVLARATRAGDEVILEAQHFALSEDVLPAPPAESFLALPTCRNLRESTENFQREMIRQALAQNNHNW
AASARALETDVANLHRLAKRLGLKD

Specific function: Required for the expression of anaerobic nitric oxide (NO) reductase, acts as a transcriptional activator for at least the norVW operon. Activation also requires sigma-54 [H]

COG id: COG3604

COG function: function code KT; Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082152, Length=507, Percent_Identity=88.3629191321499, Blast_Score=855, Evalue=0.0,
Organism=Escherichia coli, GI87082117, Length=316, Percent_Identity=48.7341772151899, Blast_Score=265, Evalue=6e-72,
Organism=Escherichia coli, GI1789087, Length=419, Percent_Identity=39.1408114558473, Blast_Score=261, Evalue=6e-71,
Organism=Escherichia coli, GI1790437, Length=302, Percent_Identity=48.3443708609272, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1788550, Length=315, Percent_Identity=43.8095238095238, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1790299, Length=336, Percent_Identity=41.6666666666667, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI1788905, Length=253, Percent_Identity=45.0592885375494, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1789233, Length=322, Percent_Identity=39.4409937888199, Blast_Score=219, Evalue=4e-58,
Organism=Escherichia coli, GI87081872, Length=322, Percent_Identity=40.0621118012422, Blast_Score=213, Evalue=3e-56,
Organism=Escherichia coli, GI1786524, Length=248, Percent_Identity=46.3709677419355, Blast_Score=195, Evalue=5e-51,
Organism=Escherichia coli, GI1787583, Length=324, Percent_Identity=37.3456790123457, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI1789828, Length=248, Percent_Identity=37.0967741935484, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081858, Length=207, Percent_Identity=34.7826086956522, Blast_Score=112, Evalue=6e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01590 GAF; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 55375; Mature: 55244

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALLRYESRQFIPLAIDGLA
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEHHHHHH
QDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGQESLKVHACVGLPLFA
HHHHCCEEEECCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHC
GQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNALLIEQLESQNMLPGSSGVFE
CCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
PIKETHMIGLSPAMTQLKKEIEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLV
HHHHHHEECCCHHHHHHHHHHEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEE
YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL
EEEEHHCCHHHHHHHHHHHHHHHHEEEECCCCCCEEECCCCEEEEECHHHHHHHHHHHHH
RVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLFVPPLRE
HHHHCCCHHHCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHC
RGDDVVLLAGYFCEQCRLRLGLSRVVLSPGARRHLLNYGWPGNVRELEHAIHRAVVLARA
CCCCEEEEHHHHHHHHHHHHCHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
TRAGDEVILEAQHFALSEDVLPAPPAESFLALPTCRNLRESTENFQREMIRQALAQNNHN
HCCCCCEEEEHHHHHCCCCCCCCCCHHHEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WAASARALETDVANLHRLAKRLGLKD
HHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALLRYESRQFIPLAIDGLA
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEHHHHHH
QDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGQESLKVHACVGLPLFA
HHHHCCEEEECCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHC
GQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNALLIEQLESQNMLPGSSGVFE
CCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
PIKETHMIGLSPAMTQLKKEIEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLV
HHHHHHEECCCHHHHHHHHHHEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEE
YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL
EEEEHHCCHHHHHHHHHHHHHHHHEEEECCCCCCEEECCCCEEEEECHHHHHHHHHHHHH
RVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLFVPPLRE
HHHHCCCHHHCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHC
RGDDVVLLAGYFCEQCRLRLGLSRVVLSPGARRHLLNYGWPGNVRELEHAIHRAVVLARA
CCCCEEEEHHHHHHHHHHHHCHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
TRAGDEVILEAQHFALSEDVLPAPPAESFLALPTCRNLRESTENFQREMIRQALAQNNHN
HCCCCCEEEEHHHHHCCCCCCCCCCHHHEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WAASARALETDVANLHRLAKRLGLKD
HHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA