| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is ybiO [H]
Identifier: 16764189
GI number: 16764189
Start: 892401
End: 894623
Strand: Reverse
Name: ybiO [H]
Synonym: STM0827
Alternate gene names: 16764189
Gene position: 894623-892401 (Counterclockwise)
Preceding gene: 16764190
Following gene: 16764187
Centisome position: 18.42
GC content: 54.39
Gene sequence:
>2223_bases ATGCGGTGGACCCTGTTCATCCTTTTTTGTCTACTGGGCGCACCTGCCCATGCGGTCGCCATACCCGGCGTGACCACGGG GACATCAACCAGCCAGCAAGCAGCGCCAGAGCCCAGTCCTGAACAAAAAAAAGCGGCCTATGCGGCCCTGGCTGACGTAC TGGAGAACGAGGCTTCACGTAACGAATTGATAGCGCAACTCCGCGAAGCCTCAACCACGCCGCCGACCGAGCCAGCGCCA GCGCTTGCGCCGCCTGCGGCCAAAGATGAGAAAACGGTACTGGAGAACGTCACCACCGTTACCCGTCAGTACGGCGATGC TTTCGCTACCCGTTTCGCCCAGCTTTATCGCAACATCACCGATGCGCCGCACAAGCCGTTTAACTCGCAAACCTTCACCA ACGCGTTAACCCACTTTTTATTTCTGGCCGTCGCGGTATTTGGTTTTTATAGCGTGATACGGCTTTGCGCCCTGCCGTTA TATCGAAAAATGGGCCTGTGGGCACGCAAGAAAAACCGTGAACGCAGCAACTGGTTACAGCTCCCGGCGATGATCGTCGG CGCGTTTATTATCGACCTCCTGCTACTGGCGCTCACCTTATTTATCGGTCAGATGCTCAGTGATAATTTCCATGCGGGAA GTCGAACTATCGCTTTTCAGCAAAGCCTGTTCCTGAATGCCTTCGCGCTAATAGAGTTCTTTAAAGCGATTCTGCGGCTT ATTTTTTGCCCTAATGTACCGGAATTACGCCCATTCGCGATTCAGGATGCGACAGCGCGTTACTGGAATCGCCGTATGAG TTCCCTTAGCAGTTTGATTGGCTACGGGCTAATTGTTGCCGTTCCGATTATTTCCAACCAGGTGAATGTTCAGGTTGGCG CGATGGCTAATGTGGCGATCATGCTCTGCATCACCATCTGGGCGCTGTACCTGATCTTTAAAAACAAAGCGGAGATTACG CAACATTTATTAAGTCTGGCGGAACGATCATTAGCCTTTTTTAGCCTGTTTATCCGCGCCTTTGCGCTGGTGTGGCACTG GCTGGCCAGCGCTTACTTTATCGTGCTGTTTTTCTTCTCGTTATTCGACCCAGGCAATAGCCTGAAGTTTATGATGGGCG CGACCGTGCGCAGTCTGGCGATTATTGGCATCGCGGCGTTTATCTCCGGTATGTTTACCCGCTGGATAGCGAAAACCATC ACCCTGTCGCCCCATACGCAGCGCAATTACCCGGAATTACAAAAGCGGCTTAACGGCTGGCTCTCCTCGGCGCTAAAAGT CGCACGCTTTTTGACCGTCTGCGTCGCCGTTATGCTGTTGCTCAACGCCTGGGGGCTATTCGATTTCTGGCACTGGCTAC ATTATGGCGCGGGGGAAAAGATGGTCGATATCCTTATCCGTATCGCGTTAATCTTATTCTTCTCCGCCGTGGGATGGACG ATCCTCGCCAGTCTGATTGAGAATCGTCTGGCCTCCGATATTCATGGCCGCCCGCTACCCAGCGCCCGCACGCGCACGCT GCTGACGCTGTTCCGCAATGCGCTGGCAGTGATTATCAGTACCATAACCATCATGATCGTGTTATCGGAAATCGGCGTCA ATATCGCGCCATTGCTGGCTGGCGCGGGCGCGTTAGGTCTGGCTATCTCTTTCGGTTCGCAAACCCTGGTGAAAGATATT ATCACCGGCGTCTTTATTCAGTTTGAAAACGGGATGAATACCGGCGACTTAGTCACCATAGGCCCGCTGACGGGGACGGT CGAAAGAATGTCGATTCGTTCCGTCGGCGTGCGGCAGGATACCGGGGCATACCATATTATCCCGTGGTCCTCGATCACCA CTTTCGCCAACTTTGTGCGCGGTATCGGCTCTGTTGTCGCCAACTATGACGTGGATCGCCATGAGGATGCGGATAAAGCG AATCAGGCGCTGAAAGACGCGGTAACGGCGCTGATGGAGACGGAGGATATTCGCGGGCTGATTATCGGCGAACCCACGTT CGCCGGTATTGTCAGTTTAACGAACACGGCGTTTACTTTACGCGTGTCGTTCACCACGCTACCGCTCAAGCAGTGGACGG TGCGTTTTGCCCTTGATAGCCAGGTGAAAAAGCATTTTGATCTGGCTAATGTGCGCGCGCCGGTGCAAACGTATCAGGTT CTGCCCGCCCCCGTCGGCGGCCCGTCGCCTGATTCGCTGCCGCCGCGCGAACCGACGATTTAG
Upstream 100 bases:
>100_bases CTGCGGCAGGAAGGGCATCATGGAATAGTCCCATTTCATTTTCCCTCCCCTGCGCCATCTATACTTAGTGTTTTGCGTCT CTTTTCTCACTGGAGGAGTC
Downstream 100 bases:
>100_bases CGTTTACGGGTGATAAAACGGCGACGCTGGTCGTCATCCATAAAGGTCCAGGCAATAAAGCGGCTTTGCTTTTGCCCCTG GGCCATCTCTTTTTTCACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 740; Mature: 740
Protein sequence:
>740_residues MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASRNELIAQLREASTTPPTEPAP ALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEIT QHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTI TLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT ILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDI ITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKA NQALKDAVTALMETEDIRGLIIGEPTFAGIVSLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV LPAPVGGPSPDSLPPREPTI
Sequences:
>Translated_740_residues MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASRNELIAQLREASTTPPTEPAP ALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEIT QHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTI TLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT ILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDI ITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKA NQALKDAVTALMETEDIRGLIIGEPTFAGIVSLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV LPAPVGGPSPDSLPPREPTI >Mature_740_residues MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASRNELIAQLREASTTPPTEPAP ALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEIT QHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTI TLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT ILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDI ITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKA NQALKDAVTALMETEDIRGLIIGEPTFAGIVSLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV LPAPVGGPSPDSLPPREPTI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI87081787, Length=742, Percent_Identity=85.7142857142857, Blast_Score=1251, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 81614; Mature: 81614
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: PS01246 UPF0003
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASR CHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH NELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNIT HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPLYRKMGLWARKKNRERSNWLQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH LPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAI HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH MLCITIWALYLIFKNKAEITQHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFS HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTITLSPHTQRNYPELQKRLNGW HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLA HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQD CCCHHHHHEECCCHHHHHHHHHHHEEEECCCCCCCCEEEECCCCCHHHHHHHHHCCCCCC TGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVTALMETEDIRGL CCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE IIGEPTFAGIVSLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV EECCCHHHHHHHHCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC LPAPVGGPSPDSLPPREPTI CCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASR CHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH NELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNIT HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPLYRKMGLWARKKNRERSNWLQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH LPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAI HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH MLCITIWALYLIFKNKAEITQHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFS HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTITLSPHTQRNYPELQKRLNGW HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLA HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQD CCCHHHHHEECCCHHHHHHHHHHHEEEECCCCCCCCEEEECCCCCHHHHHHHHHCCCCCC TGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVTALMETEDIRGL CCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE IIGEPTFAGIVSLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV EECCCHHHHHHHHCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC LPAPVGGPSPDSLPPREPTI CCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]