Click here to switch to the map view.

The map label for this gene is ybdO [H]

Identifier: 16763983

GI number: 16763983

Start: 668043

End: 668945

Strand: Reverse

Name: ybdO [H]

Synonym: STM0606

Alternate gene names: 16763983

Gene position: 668945-668043 (Counterclockwise)

Preceding gene: 16763984

Following gene: 16763982

Centisome position: 13.77

GC content: 38.98

Gene sequence:

>903_bases
ATGGCTAACCTTTACGACCTTAAAAAATTTGATCTTAACCTGTTGGTTATATTTGAATGTATCTATCAACATTTAAGCAT
TAGCAAAGCAGCAGAAACACTCTATATTACACCTTCTGCCGTAAGCCAGTCATTGCAACGCCTGCGCACGCAATTCAACG
ACCCTCTATTTATTCGTTCAGGCAAAGGAATTACGCCTACCGTAACAGGCATTAATTTACATTATCATTTAGAAAATAAT
CTTAACAGCCTGGAACAAACTATTAATATAATGAATCAGTCCAGCCTGAAGAAAAAATTTATTATCTACAGCCCACAGCT
GTTGATCACCCAATATGTGATGAAATTAGTTAAATATATCCGCAAAGATCCACAGGTTGAAATTGAACATCACGACATTT
TGACCACTGACGAACTGCCTGAAGATCTGCTTGCCTACCGCAAAGCAGATATTGTGGTTTCAATGGCCCCACTGAATAAT
CGTTCTATTGTTTGTACTCACTTTAATAGGCTAGAATGCATCCTGGTTTGCAGTGAAAACCATCCCCGACTAGGCGACAC
CGCCACTATCGACGAAATTCTACAAGAGTCATTTACGCAACTCGTCTCCCGGGCAACCGGTATGAAAGAATATCATTCAC
TTATGGATGATGTGCTGGGGGAAAGAATAATTGGTTTCAGAAGCAAATCGCTGATGACCATCGCCAACTCTATCAGCTCC
ACGGAGCTTATTGGTTTTTTACCACAAACATTTTTTGACTATTACTCTTCCTCTATCAAACTTAAAAAAGTCACCATACC
TTTTACCATTGCTCCCATACAATTCTATCTTATGTATAATAGGGCTTCGCTGAATAATAGCGGATTTGCTGAGCTCATTG
AGCACATCACAAAAAAACATTAA

Upstream 100 bases:

>100_bases
TAAATAAACTCTACATTAAGTTTAATAAACATAACTCTGGTAAATTATTGAGATTAAGTCATAATCATGGAAGATACCAT
GATAATGCCGGGAACATACT

Downstream 100 bases:

>100_bases
TAAGAAGGTCAGATAACGGATATTAATATAAATTTAATGTATATGTTTATGGAATATATTTATTTTACAAATATAATAAA
GCATTGCAAGTTCATCTAAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENN
LNSLEQTINIMNQSSLKKKFIIYSPQLLITQYVMKLVKYIRKDPQVEIEHHDILTTDELPEDLLAYRKADIVVSMAPLNN
RSIVCTHFNRLECILVCSENHPRLGDTATIDEILQESFTQLVSRATGMKEYHSLMDDVLGERIIGFRSKSLMTIANSISS
TELIGFLPQTFFDYYSSSIKLKKVTIPFTIAPIQFYLMYNRASLNNSGFAELIEHITKKH

Sequences:

>Translated_300_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENN
LNSLEQTINIMNQSSLKKKFIIYSPQLLITQYVMKLVKYIRKDPQVEIEHHDILTTDELPEDLLAYRKADIVVSMAPLNN
RSIVCTHFNRLECILVCSENHPRLGDTATIDEILQESFTQLVSRATGMKEYHSLMDDVLGERIIGFRSKSLMTIANSISS
TELIGFLPQTFFDYYSSSIKLKKVTIPFTIAPIQFYLMYNRASLNNSGFAELIEHITKKH
>Mature_299_residues
ANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENNL
NSLEQTINIMNQSSLKKKFIIYSPQLLITQYVMKLVKYIRKDPQVEIEHHDILTTDELPEDLLAYRKADIVVSMAPLNNR
SIVCTHFNRLECILVCSENHPRLGDTATIDEILQESFTQLVSRATGMKEYHSLMDDVLGERIIGFRSKSLMTIANSISST
ELIGFLPQTFFDYYSSSIKLKKVTIPFTIAPIQFYLMYNRASLNNSGFAELIEHITKKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=298, Percent_Identity=54.3624161073826, Blast_Score=337, Evalue=7e-94,
Organism=Escherichia coli, GI87081766, Length=286, Percent_Identity=29.3706293706294, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI87081684, Length=299, Percent_Identity=23.0769230769231, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790147, Length=302, Percent_Identity=24.8344370860927, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34388; Mature: 34257

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRS
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHCCCCEEEEC
GKGITPTVTGINLHYHLENNLNSLEQTINIMNQSSLKKKFIIYSPQLLITQYVMKLVKYI
CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHH
RKDPQVEIEHHDILTTDELPEDLLAYRKADIVVSMAPLNNRSIVCTHFNRLECILVCSEN
HCCCCEEEECCCCCCCCCCHHHHHHHHHHCEEEEECCCCCCEEEEEECCCEEEEEEECCC
HPRLGDTATIDEILQESFTQLVSRATGMKEYHSLMDDVLGERIIGFRSKSLMTIANSISS
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCH
TELIGFLPQTFFDYYSSSIKLKKVTIPFTIAPIQFYLMYNRASLNNSGFAELIEHITKKH
HHHHHHHHHHHHHHHCCCEEEEEEEECEEECCEEEEEEEECCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
ANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRS
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHCCCCEEEEC
GKGITPTVTGINLHYHLENNLNSLEQTINIMNQSSLKKKFIIYSPQLLITQYVMKLVKYI
CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHH
RKDPQVEIEHHDILTTDELPEDLLAYRKADIVVSMAPLNNRSIVCTHFNRLECILVCSEN
HCCCCEEEECCCCCCCCCCHHHHHHHHHHCEEEEECCCCCCEEEEEECCCEEEEEEECCC
HPRLGDTATIDEILQESFTQLVSRATGMKEYHSLMDDVLGERIIGFRSKSLMTIANSISS
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCH
TELIGFLPQTFFDYYSSSIKLKKVTIPFTIAPIQFYLMYNRASLNNSGFAELIEHITKKH
HHHHHHHHHHHHHHHCCCEEEEEEEECEEECCEEEEEEEECCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]