Click here to switch to the map view.

The map label for this gene is ybdM [H]

Identifier: 16763981

GI number: 16763981

Start: 666052

End: 666669

Strand: Reverse

Name: ybdM [H]

Synonym: STM0604

Alternate gene names: 16763981

Gene position: 666669-666052 (Counterclockwise)

Preceding gene: 16763982

Following gene: 16763979

Centisome position: 13.72

GC content: 51.46

Gene sequence:

>618_bases
ATGCAACACCGACTCACAACCGAAATAACTCACTTTCTCTCTGAACTGCCTGAAGAGGAGAGGATCGCCGCCATTAATGA
ATTTAGAATGGCGATACATAGCGTTAGTCCTTTTCGCGATGAGCCTGTCGATTGTGTCCTGTGGGTGAAAAACGATCATA
TTTCACCTAATGACTACAACCCGAATAACGTTGCGCCGCCGGAGAAAAAACTGCTGCTTAAATCGATTGAACAAGATGGG
TTTACTCAGCCGATCGTGGTGGTAAAGGCCAATACGGAGGAGTACGAGATTGTAGACGGTTTTCACCGTCATGAGCTGGG
CAAAGGAAAAGCGGCCCTGAAAAGGCGTCTGAAAGGCTACCTGCCGATAACGTGTCTGGACAGAGAACGTCACGAACGCA
TGGCGGCAACCATTCGGCATAACCGCGCGCGCGGGCGCCACCAGATCCACGCCATGTCAGAAATCGTGCGCGAACTTTCT
CTGCTAGGCTGGGACGAGAGCAAAATCGGCCAGGAGTTAGGTATGGACGCCGATGAAGTCCTGCGCCTGAAACAGATCAA
CGGCCTGCAGGAGCTTTTTGCAGACCGTCGATTCTCCAGAGCGTGGACGGTTAAATAA

Upstream 100 bases:

>100_bases
ATTACTGGTGCCGGGCGCTGTCATTCAGTCCGACAAAACCTAAGAATTACCAGCGTTATAACGAACGTATGAAAGCTAAA
CGCCAGGAATGGGGGATCTT

Downstream 100 bases:

>100_bases
CTACAGTTTACACAGGCGCTCTGCGGCGGCCAGCAGCGTTGATTCCTGTTTAGCGAAACATAAACGTATAAGCTGATGCG
GGAAAGGGGCGGCGCAAAAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MQHRLTTEITHFLSELPEEERIAAINEFRMAIHSVSPFRDEPVDCVLWVKNDHISPNDYNPNNVAPPEKKLLLKSIEQDG
FTQPIVVVKANTEEYEIVDGFHRHELGKGKAALKRRLKGYLPITCLDRERHERMAATIRHNRARGRHQIHAMSEIVRELS
LLGWDESKIGQELGMDADEVLRLKQINGLQELFADRRFSRAWTVK

Sequences:

>Translated_205_residues
MQHRLTTEITHFLSELPEEERIAAINEFRMAIHSVSPFRDEPVDCVLWVKNDHISPNDYNPNNVAPPEKKLLLKSIEQDG
FTQPIVVVKANTEEYEIVDGFHRHELGKGKAALKRRLKGYLPITCLDRERHERMAATIRHNRARGRHQIHAMSEIVRELS
LLGWDESKIGQELGMDADEVLRLKQINGLQELFADRRFSRAWTVK
>Mature_205_residues
MQHRLTTEITHFLSELPEEERIAAINEFRMAIHSVSPFRDEPVDCVLWVKNDHISPNDYNPNNVAPPEKKLLLKSIEQDG
FTQPIVVVKANTEEYEIVDGFHRHELGKGKAALKRRLKGYLPITCLDRERHERMAATIRHNRARGRHQIHAMSEIVRELS
LLGWDESKIGQELGMDADEVLRLKQINGLQELFADRRFSRAWTVK

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=205, Percent_Identity=77.0731707317073, Blast_Score=340, Evalue=3e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 23807; Mature: 23807

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHRLTTEITHFLSELPEEERIAAINEFRMAIHSVSPFRDEPVDCVLWVKNDHISPNDYN
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCC
PNNVAPPEKKLLLKSIEQDGFTQPIVVVKANTEEYEIVDGFHRHELGKGKAALKRRLKGY
CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHCCHHHHHCCCCHHHHHHHHCCC
LPITCLDRERHERMAATIRHNRARGRHQIHAMSEIVRELSLLGWDESKIGQELGMDADEV
CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
LRLKQINGLQELFADRRFSRAWTVK
HHHHHHCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQHRLTTEITHFLSELPEEERIAAINEFRMAIHSVSPFRDEPVDCVLWVKNDHISPNDYN
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCC
PNNVAPPEKKLLLKSIEQDGFTQPIVVVKANTEEYEIVDGFHRHELGKGKAALKRRLKGY
CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHCCHHHHHCCCCHHHHHHHHCCC
LPITCLDRERHERMAATIRHNRARGRHQIHAMSEIVRELSLLGWDESKIGQELGMDADEV
CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
LRLKQINGLQELFADRRFSRAWTVK
HHHHHHCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]