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The map label for this gene is ybdH [H]

Identifier: 16763979

GI number: 16763979

Start: 663676

End: 664764

Strand: Reverse

Name: ybdH [H]

Synonym: STM0602

Alternate gene names: 16763979

Gene position: 664764-663676 (Counterclockwise)

Preceding gene: 16763981

Following gene: 16763971

Centisome position: 13.69

GC content: 57.85

Gene sequence:

>1089_bases
ATGAACCACACTGAGATCCGCGTCGTTACCGGCCCGGCGAATTATTTTTCCCATGCAGGAAGCCTCGAAAGACTGACCGA
CTTTTTCACGCCGGAACAGCTTTCCCACGCCGTTTGGGTGTACGGCGAACGCGCGATTGCCGCCGCCCGGCCTTACCTGC
CGGAAGCGTTTGAACGTGCTGGCGCAAAGCATCTGCCGTTTACCGGCCATTGTAGCGAACGCCATGTTGCCCAACTGGCG
CACGCCTGCAACGACGATCGTCAGGTGGTGATAGGCGTCGGCGGCGGCGCGCTGCTCGATACCGCCAAAGCGCTCGCCCG
CCGTCTGGCGCTGCCGTTTGTCGCTATCCCGACAATCGCGGCAACCTGCGCCGCCTGGACACCGCTTTCCGTCTGGTATA
ACGACGCGGGACAGGCGTTACAGTTCGAAATTTTTGATGATGCCAATTTTCTGGTGCTGGTCGAACCGCGCATTATTCTG
CAGGCGCCCGATGACTATCTGTTAGCTGGCATTGGCGATACGCTGGCGAAATGGTATGAAGCCGTTGTGCTTGCGCCGCA
GCCTGAAACATTGCCATTGACCGTAAGGCTGGGCATTAACAGCGCGTGCGCTATTCGCGATCTCCTGCTGGACAGCAGCG
AACAAGCATTAGCGGATAAACAGCAGCGTCGGCTGACCCAGGCATTTTGCGACGTGGTGGATGCGATTATTGCTGGCGGC
GGTATGGTCGGCGGCCTCGGGGAACGCTATACCCGTGTCGCCGCCGCCCATGCGGTACACAACGGTCTGACCGTCCTGCC
GCAAACGGAAAAATTCCTGCACGGAACGAAAGTGGCTTATGGCATTCTGGTGCAAAGCGCGCTACTGGGACAAGATGACG
TGCTGGCGCAATTGATTACAGCGTACCGGCGATTTCATCTGCCGGCCCGGCTTAGCGAACTGGACGTGGATATTCATAAC
ACCGCCGAGATCGATAGGGTCATCGCGCATACCCTGCGCCCGGTCGAATCCATCCACTATTTACCGGTGACGTTAACGCC
AGACACCCTGCGTGCGGCGTTTGAAAAAGTTGAATTTTTCAGAATATAG

Upstream 100 bases:

>100_bases
TTGTTGACACACTATCACAGGGTGTTAGTATTTGGCAATCAAGACGTTTAGATGTCTAAATATAATAACAACGGTGAGAA
GACCCTAAGGACAACACAAC

Downstream 100 bases:

>100_bases
CCTGGTGACGTTGCGTTTATCAGGCCTGGCAACCCTCAGCAGCAACGCGCGCCGCCTTTTCCACCATAGCGCGCATCCTG
CCGCTCGCGGAAAAATTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MNHTEIRVVTGPANYFSHAGSLERLTDFFTPEQLSHAVWVYGERAIAAARPYLPEAFERAGAKHLPFTGHCSERHVAQLA
HACNDDRQVVIGVGGGALLDTAKALARRLALPFVAIPTIAATCAAWTPLSVWYNDAGQALQFEIFDDANFLVLVEPRIIL
QAPDDYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINSACAIRDLLLDSSEQALADKQQRRLTQAFCDVVDAIIAGG
GMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLITAYRRFHLPARLSELDVDIHN
TAEIDRVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVEFFRI

Sequences:

>Translated_362_residues
MNHTEIRVVTGPANYFSHAGSLERLTDFFTPEQLSHAVWVYGERAIAAARPYLPEAFERAGAKHLPFTGHCSERHVAQLA
HACNDDRQVVIGVGGGALLDTAKALARRLALPFVAIPTIAATCAAWTPLSVWYNDAGQALQFEIFDDANFLVLVEPRIIL
QAPDDYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINSACAIRDLLLDSSEQALADKQQRRLTQAFCDVVDAIIAGG
GMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLITAYRRFHLPARLSELDVDIHN
TAEIDRVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVEFFRI
>Mature_362_residues
MNHTEIRVVTGPANYFSHAGSLERLTDFFTPEQLSHAVWVYGERAIAAARPYLPEAFERAGAKHLPFTGHCSERHVAQLA
HACNDDRQVVIGVGGGALLDTAKALARRLALPFVAIPTIAATCAAWTPLSVWYNDAGQALQFEIFDDANFLVLVEPRIIL
QAPDDYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINSACAIRDLLLDSSEQALADKQQRRLTQAFCDVVDAIIAGG
GMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLITAYRRFHLPARLSELDVDIHN
TAEIDRVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVEFFRI

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=361, Percent_Identity=81.994459833795, Blast_Score=578, Evalue=1e-166,
Organism=Escherichia coli, GI87082352, Length=359, Percent_Identity=32.033426183844, Blast_Score=156, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 39581; Mature: 39581

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHTEIRVVTGPANYFSHAGSLERLTDFFTPEQLSHAVWVYGERAIAAARPYLPEAFERA
CCCCEEEEEECCHHHHHCCCCHHHHHHHCCHHHHCCEEEEECCHHHHHCCCCCHHHHHHC
GAKHLPFTGHCSERHVAQLAHACNDDRQVVIGVGGGALLDTAKALARRLALPFVAIPTIA
CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHH
ATCAAWTPLSVWYNDAGQALQFEIFDDANFLVLVEPRIILQAPDDYLLAGIGDTLAKWYE
HHHHCCCCHHEEECCCCCEEEEEEECCCCEEEEECCEEEEECCCCCEEECCHHHHHHHHH
AVVLAPQPETLPLTVRLGINSACAIRDLLLDSSEQALADKQQRRLTQAFCDVVDAIIAGG
EEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLIT
CCCCCHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AYRRFHLPARLSELDVDIHNTAEIDRVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVEFF
HHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHH
RI
CC
>Mature Secondary Structure
MNHTEIRVVTGPANYFSHAGSLERLTDFFTPEQLSHAVWVYGERAIAAARPYLPEAFERA
CCCCEEEEEECCHHHHHCCCCHHHHHHHCCHHHHCCEEEEECCHHHHHCCCCCHHHHHHC
GAKHLPFTGHCSERHVAQLAHACNDDRQVVIGVGGGALLDTAKALARRLALPFVAIPTIA
CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHH
ATCAAWTPLSVWYNDAGQALQFEIFDDANFLVLVEPRIILQAPDDYLLAGIGDTLAKWYE
HHHHCCCCHHEEECCCCCEEEEEEECCCCEEEEECCEEEEECCCCCEEECCHHHHHHHHH
AVVLAPQPETLPLTVRLGINSACAIRDLLLDSSEQALADKQQRRLTQAFCDVVDAIIAGG
EEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLIT
CCCCCHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AYRRFHLPARLSELDVDIHNTAEIDRVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVEFF
HHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHH
RI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]