Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
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Accession | NC_003197 |
Length | 4,857,432 |
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The map label for this gene is ykgB [H]
Identifier: 16763943
GI number: 16763943
Start: 622059
End: 622619
Strand: Direct
Name: ykgB [H]
Synonym: STM0566
Alternate gene names: 16763943
Gene position: 622059-622619 (Clockwise)
Preceding gene: 16763942
Following gene: 16763945
Centisome position: 12.81
GC content: 51.34
Gene sequence:
>561_bases ATGGATAAATATCTTCGTCTGTTAAGTCAGGGGGATCGGCTGGGGTTAACATTAATTCGCCTGAGTATCGCCATCGTTTT TATCTGGATTGGACTACTAAAATTTGTGCCCTATGAGGCAGACAGTATTACCCCGTTTGTGGCGAACAGCCCGTTTATGT CTTTTTTCTATGAACATCCGGAAGAATATCGTCAGCATCTGACTCATGAGGGCGAACTAAAACCGGAGGAACGCGCCTGG CAAACCGCCAATAATACGTATGCGTTTTCGGATGGTCTGGGCGTGGTGGAATTGATTATCGCGGCGCTGGTACTGGCTAA CCCTGTCAGCCGTTGGTTAGGGCTGGCGGGCGGCGTGCTGGCATTCCTGACGCCATTTGTCACGCTGTCGTTTTTAATCA CCACGCCGGAGGTCTGGGTTATGCCGCTGGGCGATGCGCATTATGGTTTTCCGTATTTATCGGGCGCCGGGCGGCTGGTA TTAAAAGATACGTTAATGCTGGCAGGTGCGGTGATGATCATGGCGGACTCCGCCCGTTCGTTACTTTTACAGCGACAGTA G
Upstream 100 bases:
>100_bases GGCGCAAAGTAAACAGGCGTCGTCATGGAAAATTACGTCAATGCGTATTGATAATACGGGTTACGCCACTGCGATATTAT ATAAATAAGGAGAGTCTGAG
Downstream 100 bases:
>100_bases CGACCCTCTTACCCTCTTTATGCCGCGATTCGTCGGGTGGCGCTTGCGCCATCCGACAATGTGTTGATGAATGATGGACT ACCCTGACAGAAGTTCCTGT
Product: inner membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MDKYLRLLSQGDRLGLTLIRLSIAIVFIWIGLLKFVPYEADSITPFVANSPFMSFFYEHPEEYRQHLTHEGELKPEERAW QTANNTYAFSDGLGVVELIIAALVLANPVSRWLGLAGGVLAFLTPFVTLSFLITTPEVWVMPLGDAHYGFPYLSGAGRLV LKDTLMLAGAVMIMADSARSLLLQRQ
Sequences:
>Translated_186_residues MDKYLRLLSQGDRLGLTLIRLSIAIVFIWIGLLKFVPYEADSITPFVANSPFMSFFYEHPEEYRQHLTHEGELKPEERAW QTANNTYAFSDGLGVVELIIAALVLANPVSRWLGLAGGVLAFLTPFVTLSFLITTPEVWVMPLGDAHYGFPYLSGAGRLV LKDTLMLAGAVMIMADSARSLLLQRQ >Mature_186_residues MDKYLRLLSQGDRLGLTLIRLSIAIVFIWIGLLKFVPYEADSITPFVANSPFMSFFYEHPEEYRQHLTHEGELKPEERAW QTANNTYAFSDGLGVVELIIAALVLANPVSRWLGLAGGVLAFLTPFVTLSFLITTPEVWVMPLGDAHYGFPYLSGAGRLV LKDTLMLAGAVMIMADSARSLLLQRQ
Specific function: Unknown
COG id: COG3059
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081715, Length=186, Percent_Identity=83.8709677419355, Blast_Score=325, Evalue=1e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007339 [H]
Pfam domain/function: PF04224 DUF417 [H]
EC number: NA
Molecular weight: Translated: 20735; Mature: 20735
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKYLRLLSQGDRLGLTLIRLSIAIVFIWIGLLKFVPYEADSITPFVANSPFMSFFYEHP CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCH EEYRQHLTHEGELKPEERAWQTANNTYAFSDGLGVVELIIAALVLANPVSRWLGLAGGVL HHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH AFLTPFVTLSFLITTPEVWVMPLGDAHYGFPYLSGAGRLVLKDTLMLAGAVMIMADSARS HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHH LLLQRQ HHHCCC >Mature Secondary Structure MDKYLRLLSQGDRLGLTLIRLSIAIVFIWIGLLKFVPYEADSITPFVANSPFMSFFYEHP CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCH EEYRQHLTHEGELKPEERAWQTANNTYAFSDGLGVVELIIAALVLANPVSRWLGLAGGVL HHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH AFLTPFVTLSFLITTPEVWVMPLGDAHYGFPYLSGAGRLVLKDTLMLAGAVMIMADSARS HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHH LLLQRQ HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]