| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is fimD
Identifier: 16763926
GI number: 16763926
Start: 606048
End: 608660
Strand: Direct
Name: fimD
Synonym: STM0546
Alternate gene names: 16763926
Gene position: 606048-608660 (Clockwise)
Preceding gene: 16763925
Following gene: 16763927
Centisome position: 12.48
GC content: 55.68
Gene sequence:
>2613_bases ATGAAGAAGACAACCTGGTTTGCAGGGCGATTTCCCGGCTATGTATCACCGTTAAGCAGCGTGGCGCTGTCGGTGCTGGC GGCGCTGTGTCCGCTGACGAGCCGCGGCGAAAGTTATTTCAACCCTGCGTTTTTGTCGGCGGATACCGCGTCCGTGGCGG ATTTATCTCGCTTTGAAAAAGGTAATCATCAGCCTCCCGGTATTTACCGGGTGGATATCTGGCGTAACGACGAATTCGTA GCGACGCAGGATATTCGTTTTGAGGCGGGCGCCGTGGGCACCGGCGATAAATCCGGCGGCCTGATGCCTTGTTTTACACC GGAGTGGATTAAACGGCTGGGCGTGAATACCGCGGCGTTCCCTGTCTCAGATAAAGGCGTCGATACCACGTGTATTCACC TTCCTGAGAAAATCCCGGGCGCGGAGGTCGCGTTCGATTTCGCGTCGATGCGCTTAAACATTAGCTTGCCGCAGGCGTCA TTGCTCAACAGCGCGCGTGGCTATATCCCGCCGGAAGAGTGGGATGAAGGGATACCCGCCGCACTCATTAATTACAGTTT TACCGGTAGCCGCGGAACAGACAGCGATAGCTATTTTTTGAGTCTGCTGAGTGGCTTGAACTATGGCCCCTGGCGGTTGC GTAATAACGGAGCCTGGAACTATTCGAAAGGGGACGGCTATCATTCGCAACGCTGGAACAACATTGGCACCTGGGTACAG CGCGCCATCATTCCGCTAAAAAGCGAACTGGTCATGGGGGACAGCAATACCGGGAACGATGTTTTCGACAGCGTCGGCTT TCGCGGAGCGCGGCTGTACTCTTCTGACAATATGTATCCCGATAGCCTGCAGGGCTACGCCCCCACGGTTAGAGGAATCG CCCGGACGGCGGCAAAGCTGACGATACGACAGAACGGGTATGTTATCTACCAAAGCTATGTGTCGCCGGGCGCGTTTGCG ATTACCGATCTTAATCCTACCTCTTCCAGCGGCGACCTTGAGGTGACGGTAGATGAAAAAGACGGTAGCCAACAACGTTA CACGGTGCCTTACTCTACCGTTCCGCTATTGCAGCGTGAGGGCAGGGTGAAGTATGACCTGGTGGCCGGGGATTTTCGCA GCGGCAATAGTCAGCAGTCTTCGCCATTCTTTTTCCAGGGAACGGTGATTGCCGGCCTGCCTGCGGGGCTGACGGCTTAC GGCGGTACGCAACTTGCCGATCGTTACCGTGCCGTGGTGGTCGGGGCGGGGCGAAATTTGGGCGACTGGGGAGCCGTGTC GGTTGATGTCACACATGCGCGTAGCCAACTGGCAGATGACAGCACCCATCAGGGGCAATCGTTGCGTTTTCTGTACGCCA AATCGCTGAATAATTACGGGACTAATTTTCAATTGCTGGGTTACCGCTATTCCACGCGCGGATTTTACACCCTGGATGAT GTGGCATATCGCAGTATGGAAGGGTACGACTACGAATACGATAGCGACGGACGCCGCCATAAAGTGCCGGTGGCGCAGAG CTACCACAATCTCCGCTACAGCAAAAAAGGCCGCTTTCAGGTCAATATTTCGCAAAATCTGGGGGATTACGGGTCACTGT ATCTTTCCGGCAGTCAACAAAATTACTGGAATACGGCGGATACCAATACCTGGTATCAACTGGGATACGCCAGTGGATGG CAAGGCATAAGTTATTCGCTGTCATGGTCGTGGAGCGAGTCGGTGGGGAGCTCAGGCGCCGACCGCATTCTGGCATTCAA TATGTCCGTTCCGTTTAGCGTTCTGACCGGACGGCGTTATGCGCGCGACACTATTCTTGATCGTACTTATGCCACGTTTA ACGCCAACCGCAACCGCGACGGCGACAATAGCTGGCAGACCGGCGTGGGCGGCACACTTCTGGAAGGACGTAATCTGAGC TACAGCGTGACGCAAGGGCGTAGCAGTAGCAATGGTTATAGCGGCAGCGCCAGCGCTAGCTGGCAGGCGACGTATGGCAC GCTGGGCGTGGGATATAACTACGATCGCGATCAGCATGACTATAACTGGCAACTTTCCGGCGGCGTGGTCGGTCATGCGG ATGGTATTACGTTTAGCCAACCGTTGGGCGATACCAATGTCTTGATTAAAGCGCCGGGAGCGAAAGGCGTGCGCATCGAA AACCAGACCGGCGTGAAAACGGACTGGCGGGGCTATGCGGTAATGCCCTACGCCACGGTATATCGCTATAACCGCGTCGC GTTAGATACCAACACGATGGACAACCATACCGATGTCGAAAATAACGTCAGCAGCGTAGTGCCGACAGAGGGCGCGCTGG TGCGGGCCGCTTTTGATACGCGGATAGGCGTAAGGGCAATCATTACCGCGAGGCTTGGCGGACGTCCGTTACCGTTTGGC GCGATAGTACGAGAAACCGCCAGCGGCATTACCAGTATGGTCGGCGATGATGGGCAAATTTATCTGAGCGGCTTGCCGCT AAAAGGTGAACTGTTCATCCAGTGGGGAGAGGGGAAAAACGCGCGTTGTATCGCCCCTTACGCCCTGGCGGAGGATAGCC TGAAGCAGGCGATTACGATAGCCAGCGCAACCTGTATCCGTCCGGCGTCATAA
Upstream 100 bases:
>100_bases CAACGTGACATTTCAGTCCGTCAATGATTACGGCGCATTGACGTCGGCGACAACGGCCAGTCTCGGTTAAGCAGAGAGCG TGAAGCCACACGAGAACACG
Downstream 100 bases:
>100_bases AAGGAAAAATAGAGATGAAAATATACTCAGCGCTATTGCTGGCGGGGACCGCGCTCTTTTTCACCCATCCCGCGCTGGCG ACGGTTTGCCGTAATTCAAA
Product: outer membrane usher protein precursor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 870; Mature: 870
Protein sequence:
>870_residues MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV ATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW QGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPAS
Sequences:
>Translated_870_residues MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV ATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW QGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPAS >Mature_870_residues MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV ATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW QGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPAS
Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family
Homologues:
Organism=Escherichia coli, GI1786744, Length=857, Percent_Identity=70.5950991831972, Blast_Score=1289, Evalue=0.0, Organism=Escherichia coli, GI1790772, Length=867, Percent_Identity=47.4048442906574, Blast_Score=804, Evalue=0.0, Organism=Escherichia coli, GI1787172, Length=874, Percent_Identity=47.254004576659, Blast_Score=780, Evalue=0.0, Organism=Escherichia coli, GI1789533, Length=856, Percent_Identity=37.9672897196262, Blast_Score=556, Evalue=1e-159, Organism=Escherichia coli, GI1786332, Length=880, Percent_Identity=32.2727272727273, Blast_Score=390, Evalue=1e-109, Organism=Escherichia coli, GI1788427, Length=828, Percent_Identity=30.3140096618358, Blast_Score=318, Evalue=1e-87, Organism=Escherichia coli, GI87081778, Length=872, Percent_Identity=28.2110091743119, Blast_Score=250, Evalue=2e-67, Organism=Escherichia coli, GI1789610, Length=704, Percent_Identity=26.7045454545455, Blast_Score=140, Evalue=3e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FIMD_SALTY (P37924)
Other databases:
- EMBL: L19338 - EMBL: AE006468 - RefSeq: NP_459541.1 - ProteinModelPortal: P37924 - PRIDE: P37924 - GeneID: 1252066 - GenomeReviews: AE006468_GR - KEGG: stm:STM0546 - NMPDR: fig|99287.1.peg.531 - HOGENOM: HBG511492 - OMA: ANWQATY - ProtClustDB: PRK15198 - BioCyc: STYP99287:STM0546-MONOMER - InterPro: IPR000015 - InterPro: IPR018030
Pfam domain/function: PF00577 Usher
EC number: NA
Molecular weight: Translated: 95128; Mature: 95128
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEK CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHC GNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAF CCCCCCCEEEEEEECCCCEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEC PVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPA CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCHHHHHHCCCCCCCHHHHCCCCCE ALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ EEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHCCCHHHHHHH RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKL HHHCCCCCEEEECCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEE TIRQNGYVIYQSYVSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQRE EEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHC GRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNL CCEEEEEEECCCCCCCCCCCCCEEEECEEEECCCCCCCCCCCHHHHCCEEEEEEECCCCC GDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD CCCCEEEEEEHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCCEEEEHH VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQ HHHHHCCCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCC NYWNTADTNTWYQLGYASGWQGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRY CCCCCCCCCCEEEECCCCCCCCEEEEEEECCHHHCCCCCCCEEEEEECCCCHHHHCCCHH ARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASAS HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCC WQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE EEEEEEEEECCCCCCCCCCCCCEEECCCEEECCCCCEECCCCCCCEEEEECCCCCCEEEE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDT CCCCCCCCCCCEEECCCHHHEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEEECCC RIGVRAIITARLGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKN CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCC ARCIAPYALAEDSLKQAITIASATCIRPAS CEEEECHHHHHHHHHHHHHHHHHEEECCCC >Mature Secondary Structure MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEK CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHC GNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAF CCCCCCCEEEEEEECCCCEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEC PVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPA CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCHHHHHHCCCCCCCHHHHCCCCCE ALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ EEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHCCCHHHHHHH RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKL HHHCCCCCEEEECCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEE TIRQNGYVIYQSYVSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQRE EEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHC GRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNL CCEEEEEEECCCCCCCCCCCCCEEEECEEEECCCCCCCCCCCHHHHCCEEEEEEECCCCC GDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD CCCCEEEEEEHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCCEEEEHH VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQ HHHHHCCCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCC NYWNTADTNTWYQLGYASGWQGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRY CCCCCCCCCCEEEECCCCCCCCEEEEEEECCHHHCCCCCCCEEEEEECCCCHHHHCCCHH ARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASAS HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCC WQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE EEEEEEEEECCCCCCCCCCCCCEEECCCEEECCCCCEECCCCCCCEEEEECCCCCCEEEE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDT CCCCCCCCCCCEEECCCHHHEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEEECCC RIGVRAIITARLGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKN CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCC ARCIAPYALAEDSLKQAITIASATCIRPAS CEEEECHHHHHHHHHHHHHHHHHEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609