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The map label for this gene is ybcJ [H]

Identifier: 16763921

GI number: 16763921

Start: 602488

End: 602700

Strand: Reverse

Name: ybcJ [H]

Synonym: STM0541

Alternate gene names: 16763921

Gene position: 602700-602488 (Counterclockwise)

Preceding gene: 16763922

Following gene: 16763920

Centisome position: 12.41

GC content: 57.28

Gene sequence:

>213_bases
ATGGCGACATTCTCTTTAGGCAAGCACCCGCACGTCGAGCTGTGCGATCTGCTCAAGCTGGAAGGCTGGAGCGAAAGCGG
CGCGCAGGCGAAAATCGCCATTGCCGACGGGTTGGTGAAGGTTGATGGCGCGGTTGAAACGCGTAAACGCTGCAAAATTG
TCGCCGGGCAAACCGTTAGCTTTGAAGGCCAAAGTGTGAACGTCGTGGCCTGA

Upstream 100 bases:

>100_bases
ACGCCAGTACCGGGCGGCGTCGGCCCGATGACGGTCGCCACGCTTATCGAAAACACGCTGCAGGCGTGCATTGAATATCA
CGATCCACAAGGAAAATAAT

Downstream 100 bases:

>100_bases
TACAGAGTGCCGGATAGCGACGCAAAGCGTCTTATCCGGCCTGATTACGCTGTCTTTTCAGATAATCATCCACTTAATCC
TCTGCGTTCCAACTGCTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIADGLVKVDGAVETRKRCKIVAGQTVSFEGQSVNVVA

Sequences:

>Translated_70_residues
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIADGLVKVDGAVETRKRCKIVAGQTVSFEGQSVNVVA
>Mature_69_residues
ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIADGLVKVDGAVETRKRCKIVAGQTVSFEGQSVNVVA

Specific function: Its structure and the presence of conserved basic residues indicates that it probably binds RNA [H]

COG id: COG2501

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081752, Length=70, Percent_Identity=92.8571428571429, Blast_Score=131, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7396; Mature: 7264

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIADGLVKVDGAVETRKRCKIVAGQTVS
CCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCEEEECCCCCCCCCEEEECCCEEE
FEGQSVNVVA
ECCCEEEEEC
>Mature Secondary Structure 
ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIADGLVKVDGAVETRKRCKIVAGQTVS
CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCEEEECCCCCCCCCEEEECCCEEE
FEGQSVNVVA
ECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1748668; 7567469 [H]