| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is ybbP [H]
Identifier: 16763888
GI number: 16763888
Start: 567122
End: 569536
Strand: Direct
Name: ybbP [H]
Synonym: STM0508
Alternate gene names: 16763888
Gene position: 567122-569536 (Clockwise)
Preceding gene: 16763887
Following gene: 16763889
Centisome position: 11.68
GC content: 58.51
Gene sequence:
>2415_bases ATGATAGCTCGCTGGTTCTGGCGCGAATGGCGCTCGCCGTCGCTGATTATTGTCTGGCTGGCGTTGAGTCTGGCGGTGGC CTGCGTACTGGCGCTCGGCAGTATCAGCGACCGGATGGAAAAAGGGTTAAGTCAGCAAAGCCGCGAGTTTATGGCAGGCG ATCGGACGCTGCAAAGTTCGCGGGAGGTACCGAAAGCCTGGCTTGAAGAGGCGCGTAAACGCGGCCTTAACGTGGGCGAG CAGTTAACCTTTGCGACCATGACGTTTGCCGGCGATACGCCGCAACTGGCCAGCGTGAAGGCGGTAGATAGCGTTTATCC GATGTACGGCGAATTGCAAACCCGTCCAGGCGGAGTGAAAGCGCAGCCGGGTAGCGTACTGCTGGCGCCGCGTCTGATGG CGCTGCTTAATTTGAAAACGGGCGATACCATTGATGTCGGCGACGTGACCTTGCGTATTGCCGGTGAAGTGGTGCAGGAG CCGGATTCCGGATTTAACCCTTTTCAGATGGCGCCGCGTCTGATGATGAATATGGCCGATGTGGCAAAAACCGGTGCGAT ACAGCCGGGGAGCCGCGTGATGTGGCGGTATAAATTCGGCGGAACGCCGCAACAGCTTGCTGGCTATGAAAGCTGGCTGT TACCGCAGCTTAAACCGGAACATCGCTGGTACGGACTGGAGCAGGATGACGGGGCATTGGGGAAATCGCTCGAACGTTCG CAGCAGTTTTTGCTGCTTTCGGCGTTATTAACGCTACTGCTGGCGGTAGCTGCCGTCGCGGTGGCGATGAGCCATTACTG CCGTAGCCGCTACGATCTGGTGGCGATTTTAAAAACGTTGGGCGCGGGCCGGGCCCAGTTGCGTAAACTTATTATCGGAC AGTGGTTGATGGTGCTGGGGCTTTCCGCCGTCACGGGAGGCGCGATTGGGTTACTGTTTGAAAACATATTGCTGGTGCTG CTAAAACCGGTACTGCCCGCCGATTTGCCGCCCGCCAGCCTGTGGCCCTGGCTGTGGGCGCTGGGCGCGATGACGGTCAT CTCTCTGCTGGTCGGTTTACGGCCTTATCGATTGTTGCTGGCGACCCAGCCGCTACGGGTGCTGCGCCGCGATGTTGTTG CTCGCGTCTGGCCGTTAAAAATTTATTTGCCTGTCGCCTGCGCCGTCGTGGTGGCGTTGCTCGTCGGATTGATGGGCGGA AGTATGCTGTTGTGGGCGGTTCTGGCGGGCGCCGTGATACTGGCGCTGCTGTGCGGTCTGGTGGGCTGGATGCTGCTTAA CGTGCTGCGCGGCATGACGTTGACGTCGCTACCGCTGCGTCTGGCCGTCAGCCGACTTCTGCGTCAGCCGTGGTCAACGT TGAGTCAGCTTTCGGCGTTTTCGCTTTCGTTTATGCTGCTGGCGCTCTTGCTGGTGCTGCGCGGCGACCTCCTTGATCGC TGGCAACAGCAGCTCCCGCCGGAAAGTCCGAACTATTTCCTTATCAATATTGCTTCAGAACAGGTCGCGCCGCTGAAAGC CTTTTTGGCGGAACATCAGGTGATCCCGCAGACGTTTTATCCGATTGTGCGGGCGCGGTTAACGAAGATAAACGGTAATC CGACGGAAGGTCAGCAGGATGAGTCGCTCAACCGTGAACTGAATTTGACCTGGCAGGATACGCGCCCGGCGCATAATCCG CTGGTCGCCGGTCACTGGCCGCCAAAACCGGGCGAAGTCTCCATGGAAGAGGGGCTGGCGAAGCGGCTGAACGTCAAACT CGGCGATAGCGTAACCTTTATGGGCGATACCCAGGCATTTAGCGCTAAAGTCACCAGCCTGCGTCAAGTGGACTGGGAAA GCCTGCGGCCCAACTTTTTCTTCATTTTTCCTTCCGGGGCGCTGGACGGGCAACCGCAAAGCTGGTTGACCAGTTTTCGC TGGGAGAATGGCAACGGCATGTTAACGCAGCTTAACCGCGAGTTTCCTACCGTCAGCCTGTTAGATATCGGGGCGATCCT GAAACAGGTGGGACAGGTGCTGGAGCAGGTCAGTCGGGCGCTGGAGGTGATGGTTGTGCTAGTCACCCTCTGCGGCATGT TGCTATTACTGGCCCAGGTACAGGTCGGGATGCGTCAGCGCCATCAGGAGCTGGTGGTGTGGCGCACATTAGGAGCCGGA AAGAAACTGTTGCGTACCACACTCTGGTGCGAATTCGCCATGCTGGGGTTAGTTGCCGGGCTGGTCGCCGCGATTGGCGC GGAGACGGCGCTGGCGATCTTACAAATCAACGTTTTTGATTTCCCCTGGGAGCCGGACTGGCGTTTATGGGGCGCACTGC CGTTTTGCGGCGCGCTGCTGCTTTCCGTATGCGGCGGCTGGCTTGGCGTTCGTTTGCTGAAAGGCAAAGCGCTATTCCGA CAGTTTAGCGGATGA
Upstream 100 bases:
>100_bases AGCACGGCACCACGCTGATTCTGGTGACGCACGACCCGGCGCTGGCGGCGCGCTGCGACCGGCGGCTGCGGTTGGTCAAC GGTCAGTTACAGGAGGAGGC
Downstream 100 bases:
>100_bases TTCATGATGTGAATAATTTCGCGCCGGTTTTTAAAACGGCGCGTACTTTTTTAGTCGCACAAATTGATAACTCCTTGATT TTTAGTAGCACAAATCATTA
Product: inner membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 804; Mature: 804
Protein sequence:
>804_residues MIARWFWREWRSPSLIIVWLALSLAVACVLALGSISDRMEKGLSQQSREFMAGDRTLQSSREVPKAWLEEARKRGLNVGE QLTFATMTFAGDTPQLASVKAVDSVYPMYGELQTRPGGVKAQPGSVLLAPRLMALLNLKTGDTIDVGDVTLRIAGEVVQE PDSGFNPFQMAPRLMMNMADVAKTGAIQPGSRVMWRYKFGGTPQQLAGYESWLLPQLKPEHRWYGLEQDDGALGKSLERS QQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAILKTLGAGRAQLRKLIIGQWLMVLGLSAVTGGAIGLLFENILLVL LKPVLPADLPPASLWPWLWALGAMTVISLLVGLRPYRLLLATQPLRVLRRDVVARVWPLKIYLPVACAVVVALLVGLMGG SMLLWAVLAGAVILALLCGLVGWMLLNVLRGMTLTSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDR WQQQLPPESPNYFLINIASEQVAPLKAFLAEHQVIPQTFYPIVRARLTKINGNPTEGQQDESLNRELNLTWQDTRPAHNP LVAGHWPPKPGEVSMEEGLAKRLNVKLGDSVTFMGDTQAFSAKVTSLRQVDWESLRPNFFFIFPSGALDGQPQSWLTSFR WENGNGMLTQLNREFPTVSLLDIGAILKQVGQVLEQVSRALEVMVVLVTLCGMLLLLAQVQVGMRQRHQELVVWRTLGAG KKLLRTTLWCEFAMLGLVAGLVAAIGAETALAILQINVFDFPWEPDWRLWGALPFCGALLLSVCGGWLGVRLLKGKALFR QFSG
Sequences:
>Translated_804_residues MIARWFWREWRSPSLIIVWLALSLAVACVLALGSISDRMEKGLSQQSREFMAGDRTLQSSREVPKAWLEEARKRGLNVGE QLTFATMTFAGDTPQLASVKAVDSVYPMYGELQTRPGGVKAQPGSVLLAPRLMALLNLKTGDTIDVGDVTLRIAGEVVQE PDSGFNPFQMAPRLMMNMADVAKTGAIQPGSRVMWRYKFGGTPQQLAGYESWLLPQLKPEHRWYGLEQDDGALGKSLERS QQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAILKTLGAGRAQLRKLIIGQWLMVLGLSAVTGGAIGLLFENILLVL LKPVLPADLPPASLWPWLWALGAMTVISLLVGLRPYRLLLATQPLRVLRRDVVARVWPLKIYLPVACAVVVALLVGLMGG SMLLWAVLAGAVILALLCGLVGWMLLNVLRGMTLTSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDR WQQQLPPESPNYFLINIASEQVAPLKAFLAEHQVIPQTFYPIVRARLTKINGNPTEGQQDESLNRELNLTWQDTRPAHNP LVAGHWPPKPGEVSMEEGLAKRLNVKLGDSVTFMGDTQAFSAKVTSLRQVDWESLRPNFFFIFPSGALDGQPQSWLTSFR WENGNGMLTQLNREFPTVSLLDIGAILKQVGQVLEQVSRALEVMVVLVTLCGMLLLLAQVQVGMRQRHQELVVWRTLGAG KKLLRTTLWCEFAMLGLVAGLVAAIGAETALAILQINVFDFPWEPDWRLWGALPFCGALLLSVCGGWLGVRLLKGKALFR QFSG >Mature_804_residues MIARWFWREWRSPSLIIVWLALSLAVACVLALGSISDRMEKGLSQQSREFMAGDRTLQSSREVPKAWLEEARKRGLNVGE QLTFATMTFAGDTPQLASVKAVDSVYPMYGELQTRPGGVKAQPGSVLLAPRLMALLNLKTGDTIDVGDVTLRIAGEVVQE PDSGFNPFQMAPRLMMNMADVAKTGAIQPGSRVMWRYKFGGTPQQLAGYESWLLPQLKPEHRWYGLEQDDGALGKSLERS QQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAILKTLGAGRAQLRKLIIGQWLMVLGLSAVTGGAIGLLFENILLVL LKPVLPADLPPASLWPWLWALGAMTVISLLVGLRPYRLLLATQPLRVLRRDVVARVWPLKIYLPVACAVVVALLVGLMGG SMLLWAVLAGAVILALLCGLVGWMLLNVLRGMTLTSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDR WQQQLPPESPNYFLINIASEQVAPLKAFLAEHQVIPQTFYPIVRARLTKINGNPTEGQQDESLNRELNLTWQDTRPAHNP LVAGHWPPKPGEVSMEEGLAKRLNVKLGDSVTFMGDTQAFSAKVTSLRQVDWESLRPNFFFIFPSGALDGQPQSWLTSFR WENGNGMLTQLNREFPTVSLLDIGAILKQVGQVLEQVSRALEVMVVLVTLCGMLLLLAQVQVGMRQRHQELVVWRTLGAG KKLLRTTLWCEFAMLGLVAGLVAAIGAETALAILQINVFDFPWEPDWRLWGALPFCGALLLSVCGGWLGVRLLKGKALFR QFSG
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=804, Percent_Identity=88.18407960199, Blast_Score=1351, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 88774; Mature: 88774
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIARWFWREWRSPSLIIVWLALSLAVACVLALGSISDRMEKGLSQQSREFMAGDRTLQSS CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH REVPKAWLEEARKRGLNVGEQLTFATMTFAGDTPQLASVKAVDSVYPMYGELQTRPGGVK HCCHHHHHHHHHHCCCCCCCHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC AQPGSVLLAPRLMALLNLKTGDTIDVGDVTLRIAGEVVQEPDSGFNPFQMAPRLMMNMAD CCCCCEEHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH VAKTGAIQPGSRVMWRYKFGGTPQQLAGYESWLLPQLKPEHRWYGLEQDDGALGKSLERS HHHHCCCCCCCCEEEEEECCCCHHHHHCCHHHCCCCCCCCHHCCCCCCCCCHHHHHHHHH QQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAILKTLGAGRAQLRKLIIGQWLMVLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LSAVTGGAIGLLFENILLVLLKPVLPADLPPASLWPWLWALGAMTVISLLVGLRPYRLLL HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH ATQPLRVLRRDVVARVWPLKIYLPVACAVVVALLVGLMGGSMLLWAVLAGAVILALLCGL HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH VGWMLLNVLRGMTLTSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDR HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WQQQLPPESPNYFLINIASEQVAPLKAFLAEHQVIPQTFYPIVRARLTKINGNPTEGQQD HHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC ESLNRELNLTWQDTRPAHNPLVAGHWPPKPGEVSMEEGLAKRLNVKLGDSVTFMGDTQAF CCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCEECCCEEEECCCHHH SAKVTSLRQVDWESLRPNFFFIFPSGALDGQPQSWLTSFRWENGNGMLTQLNREFPTVSL HHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHHEEECCCCCEEECCCCCCCCHH LDIGAILKQVGQVLEQVSRALEVMVVLVTLCGMLLLLAQVQVGMRQRHQELVVWRTLGAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KKLLRTTLWCEFAMLGLVAGLVAAIGAETALAILQINVFDFPWEPDWRLWGALPFCGALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHH LSVCGGWLGVRLLKGKALFRQFSG HHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MIARWFWREWRSPSLIIVWLALSLAVACVLALGSISDRMEKGLSQQSREFMAGDRTLQSS CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH REVPKAWLEEARKRGLNVGEQLTFATMTFAGDTPQLASVKAVDSVYPMYGELQTRPGGVK HCCHHHHHHHHHHCCCCCCCHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC AQPGSVLLAPRLMALLNLKTGDTIDVGDVTLRIAGEVVQEPDSGFNPFQMAPRLMMNMAD CCCCCEEHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH VAKTGAIQPGSRVMWRYKFGGTPQQLAGYESWLLPQLKPEHRWYGLEQDDGALGKSLERS HHHHCCCCCCCCEEEEEECCCCHHHHHCCHHHCCCCCCCCHHCCCCCCCCCHHHHHHHHH QQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAILKTLGAGRAQLRKLIIGQWLMVLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LSAVTGGAIGLLFENILLVLLKPVLPADLPPASLWPWLWALGAMTVISLLVGLRPYRLLL HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH ATQPLRVLRRDVVARVWPLKIYLPVACAVVVALLVGLMGGSMLLWAVLAGAVILALLCGL HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH VGWMLLNVLRGMTLTSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDR HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WQQQLPPESPNYFLINIASEQVAPLKAFLAEHQVIPQTFYPIVRARLTKINGNPTEGQQD HHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC ESLNRELNLTWQDTRPAHNPLVAGHWPPKPGEVSMEEGLAKRLNVKLGDSVTFMGDTQAF CCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCEECCCEEEECCCHHH SAKVTSLRQVDWESLRPNFFFIFPSGALDGQPQSWLTSFRWENGNGMLTQLNREFPTVSL HHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHHEEECCCCCEEECCCCCCCCHH LDIGAILKQVGQVLEQVSRALEVMVVLVTLCGMLLLLAQVQVGMRQRHQELVVWRTLGAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KKLLRTTLWCEFAMLGLVAGLVAAIGAETALAILQINVFDFPWEPDWRLWGALPFCGALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHH LSVCGGWLGVRLLKGKALFRQFSG HHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]