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The map label for this gene is rbsC [H]

Identifier: 218930645

GI number: 218930645

Start: 4055912

End: 4056901

Strand: Direct

Name: rbsC [H]

Synonym: YPO3635

Alternate gene names: 218930645

Gene position: 4055912-4056901 (Clockwise)

Preceding gene: 218930644

Following gene: 218930646

Centisome position: 87.15

GC content: 51.31

Gene sequence:

>990_bases
ATGGATAAGCTAAAACTGCGCCAACTCACGGGGCACCATGAGTTTTATCTCGGGTTGCTGGTGTTGCTGTTGGCTATCGG
GTTGAGTGTGCAAAGCCCTGAGTTCCTGACATTGGGGAATTTAACCGATGTGGCGACCAGTTATGCCATTTTGGGGATTT
TAGCCTGCGGTCTATTTGTGGTGCTGATTGCTGGTGGCATTGATATCTCTTTCCCGGCGGTCACGGCTATCGCGCAGTAT
GTGATGGCATCGTGGGTGATTACACAGGGTGGCAGCTTCCCGCTGGCATTGGTCATGGCAATGGCGGTTGGCCTGCTACT
GGGGCTGATCAACGGATTACTGGTTTATTGGCTGAAAGTCCCGGCGATCATTATCACCATCGCCACGCTGAATCTGTTTT
ATGGGCTGCTGGTTTACTTTACCAACGGGACTTGGTTGTACGGCTTCCCAGACTGGTTTATGACCGGTATTAACTGGTTC
TCATTTGAAGGCAGTGACGGTTACGACTACGGCCTGACACTGCCGCTGTTATGTCTGGCGGGCACCATCATCTTCACCGG
TGTCATGATGAATTACACCCGGTTAGGGCGGCAGATTTTTGCCATGGGCAGCAATAAAGATGCCGCCTCTCGTCTTGGCA
TTAACATCTTTCGGTTGCACCTGTATGTCTACGGCTACATGGGCATATTGGCAGGCGTGGCAGCGGTAGTACAGGCTCAG
ATTTCCCAATCAGTCGCACCTAACTCTTTGATGGGATTTGAGTTAACGGTATTGGCTGCGGTGGTCCTTGGTGGCACCAG
TATGAGCGGTGGACGCGGATCACTGACCGGAACGGTGCTGGGTGTCATGTTATTGGCTTTTCTGCAAAACGGCTTAACGC
TGCTGAGTGTCTCTTCTTATTGGCATACCGTTTTCAGTGGCGTGATTATTTTGGTGAGTATCAGTACCACCGCGTGGAAT
GAAAAACGCAAGTTGTTGAGGGAGCACTGA

Upstream 100 bases:

>100_bases
TATTACAACAGCCACCGGGTGCTGGTGATGCGTAAAGGCGAATTGATCGCCGAGTTTTATCCTCATCAGTGTACCGAACA
ACAGATCGCCGAGGTGGTCA

Downstream 100 bases:

>100_bases
GATGACCTGGTTAAACCGAACTATCCCCGATGACCGTATTATCCGCCTGCAATTACTGATTCTGATTGCGGTGATGTTGG
TCTTCTCACTGACTCTGGGG

Product: putative branched-chain amino acid transport system, permease component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MDKLKLRQLTGHHEFYLGLLVLLLAIGLSVQSPEFLTLGNLTDVATSYAILGILACGLFVVLIAGGIDISFPAVTAIAQY
VMASWVITQGGSFPLALVMAMAVGLLLGLINGLLVYWLKVPAIIITIATLNLFYGLLVYFTNGTWLYGFPDWFMTGINWF
SFEGSDGYDYGLTLPLLCLAGTIIFTGVMMNYTRLGRQIFAMGSNKDAASRLGINIFRLHLYVYGYMGILAGVAAVVQAQ
ISQSVAPNSLMGFELTVLAAVVLGGTSMSGGRGSLTGTVLGVMLLAFLQNGLTLLSVSSYWHTVFSGVIILVSISTTAWN
EKRKLLREH

Sequences:

>Translated_329_residues
MDKLKLRQLTGHHEFYLGLLVLLLAIGLSVQSPEFLTLGNLTDVATSYAILGILACGLFVVLIAGGIDISFPAVTAIAQY
VMASWVITQGGSFPLALVMAMAVGLLLGLINGLLVYWLKVPAIIITIATLNLFYGLLVYFTNGTWLYGFPDWFMTGINWF
SFEGSDGYDYGLTLPLLCLAGTIIFTGVMMNYTRLGRQIFAMGSNKDAASRLGINIFRLHLYVYGYMGILAGVAAVVQAQ
ISQSVAPNSLMGFELTVLAAVVLGGTSMSGGRGSLTGTVLGVMLLAFLQNGLTLLSVSSYWHTVFSGVIILVSISTTAWN
EKRKLLREH
>Mature_329_residues
MDKLKLRQLTGHHEFYLGLLVLLLAIGLSVQSPEFLTLGNLTDVATSYAILGILACGLFVVLIAGGIDISFPAVTAIAQY
VMASWVITQGGSFPLALVMAMAVGLLLGLINGLLVYWLKVPAIIITIATLNLFYGLLVYFTNGTWLYGFPDWFMTGINWF
SFEGSDGYDYGLTLPLLCLAGTIIFTGVMMNYTRLGRQIFAMGSNKDAASRLGINIFRLHLYVYGYMGILAGVAAVVQAQ
ISQSVAPNSLMGFELTVLAAVVLGGTSMSGGRGSLTGTVLGVMLLAFLQNGLTLLSVSSYWHTVFSGVIILVSISTTAWN
EKRKLLREH

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=300, Percent_Identity=35.6666666666667, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=30.1282051282051, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788896, Length=320, Percent_Identity=30.3125, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1790524, Length=298, Percent_Identity=30.2013422818792, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=31.4685314685315, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87082395, Length=305, Percent_Identity=29.5081967213115, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787794, Length=319, Percent_Identity=28.8401253918495, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=33.0882352941176, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788471, Length=320, Percent_Identity=32.1875, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=31.3953488372093, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35419; Mature: 35419

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLKLRQLTGHHEFYLGLLVLLLAIGLSVQSPEFLTLGNLTDVATSYAILGILACGLFV
CCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
VLIAGGIDISFPAVTAIAQYVMASWVITQGGSFPLALVMAMAVGLLLGLINGLLVYWLKV
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAIIITIATLNLFYGLLVYFTNGTWLYGFPDWFMTGINWFSFEGSDGYDYGLTLPLLCLA
HHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCEEEECCCCCCCCCHHHHHHHHH
GTIIFTGVMMNYTRLGRQIFAMGSNKDAASRLGINIFRLHLYVYGYMGILAGVAAVVQAQ
HHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISQSVAPNSLMGFELTVLAAVVLGGTSMSGGRGSLTGTVLGVMLLAFLQNGLTLLSVSSY
HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHH
WHTVFSGVIILVSISTTAWNEKRKLLREH
HHHHHHHHEEEEEECCHHHHHHHHHHHCC
>Mature Secondary Structure
MDKLKLRQLTGHHEFYLGLLVLLLAIGLSVQSPEFLTLGNLTDVATSYAILGILACGLFV
CCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
VLIAGGIDISFPAVTAIAQYVMASWVITQGGSFPLALVMAMAVGLLLGLINGLLVYWLKV
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAIIITIATLNLFYGLLVYFTNGTWLYGFPDWFMTGINWFSFEGSDGYDYGLTLPLLCLA
HHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCEEEECCCCCCCCCHHHHHHHHH
GTIIFTGVMMNYTRLGRQIFAMGSNKDAASRLGINIFRLHLYVYGYMGILAGVAAVVQAQ
HHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISQSVAPNSLMGFELTVLAAVVLGGTSMSGGRGSLTGTVLGVMLLAFLQNGLTLLSVSSY
HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHH
WHTVFSGVIILVSISTTAWNEKRKLLREH
HHHHHHHHEEEEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]