Click here to switch to the map view.

The map label for this gene is lsrB [H]

Identifier: 218930643

GI number: 218930643

Start: 4053161

End: 4054219

Strand: Direct

Name: lsrB [H]

Synonym: YPO3633

Alternate gene names: 218930643

Gene position: 4053161-4054219 (Clockwise)

Preceding gene: 218930640

Following gene: 218930644

Centisome position: 87.09

GC content: 46.65

Gene sequence:

>1059_bases
TTGCAACATAATAAGATTTCTTACCTTGCAACCGTTCCGTTACCTGAAAGAAAACAAGAAGGTATTGCTATGAAATTTAA
TCTCGCATTACTGAATGTATGTATCGTTTCTGCATGCATGCTGTTCACCACACAAACCCTGGCAGCAGAGAAAAAACATG
AGATTGCCGTTGTAGCGAAAGTGACCGGTATCCCCTGGTTTACCCGCATGGAAGTCGGGGTAAATGAAGCCGCGAAGAAG
CTGAATGTCAATGCCTATCAAGTCGGGCCAGCGACACCGGACCCTGCGCAACAAGTTAAAGTGATTGAAGATCTTATTGC
GAAAAATGTCGATGCCATTATTGTGGTGCCGAACGATGCCAAAGTGTTGGAGCCCGTGCTGAAGAAAGCACAGGAAAAAG
GCATTGTGGTGCTGACGCATGAATCCCCAGATCAACGTATCGGGCAGTGGGACGTCGAAACTATCGATAGCGAAAAATAT
GCTCAAGCCAATATGGATGAGCTGGCAAAAGCCATGGGTAATAAAGGTGGCTATGCCATTTATGTGGGTTCCCTGACGGT
GCCGTTACATAACGCTTGGGCTGATTACGCTATCAAATATCAGAAAGAAAAATACCCAGAAATGTTTGAAGTCACGCCAC
GTTTACCGGTGGCAGAGAATATTGATAAGTCTTACTCCACCACGCTGGATCTGATGAAAACATATCCGCAAATGAAAGGG
ATTATTGGTTTCGGTTCACTGGGGCCAATTGGTGCAGGTCAGGCGGTTGCCAAGAAACGGGCTAAGGACCAAATTGCGGT
AGTGGGTATTGCGATGCCAGCACAGGCCGCGCCGTATCTGATGCGTGGCGATATCAAAAAAGCCTTGCTGTGGGATCCAA
AGGATGCCGGTTTTGCGGTAGTAGAAATTGCCAATCAATTGTTGAATGGCCAGAAAGTGACAGAAGATTTGACCATCGAT
GGCTTGGGTAAAGCCGATGTGGACAGTAAGAACGGGGTGATCCGTTTTAACAAGATCCTCGAGGTCACCAAAGATAATGC
CAAAACGTTAGGCTTCTGA

Upstream 100 bases:

>100_bases
CTTGCATCACATTTCACTCTGGTCCGCCGAGCAGCCTCTTGTGTTTTTTTGTTAACCTTTGGTCTGTGAATGATAGTGAC
GTGAAAATAAAACAATCACT

Downstream 100 bases:

>100_bases
TTTTCAGGTGCCACACCAGGGAATTGGCCGCAGATTCATCGTGGCCAGCAGTAAGAGATTCGTTATCAGTACAGTAAGCT
GTCAGTAATGCAGTAAGTTA

Product: putative periplasmic binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MQHNKISYLATVPLPERKQEGIAMKFNLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAKVTGIPWFTRMEVGVNEAAKK
LNVNAYQVGPATPDPAQQVKVIEDLIAKNVDAIIVVPNDAKVLEPVLKKAQEKGIVVLTHESPDQRIGQWDVETIDSEKY
AQANMDELAKAMGNKGGYAIYVGSLTVPLHNAWADYAIKYQKEKYPEMFEVTPRLPVAENIDKSYSTTLDLMKTYPQMKG
IIGFGSLGPIGAGQAVAKKRAKDQIAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGFAVVEIANQLLNGQKVTEDLTID
GLGKADVDSKNGVIRFNKILEVTKDNAKTLGF

Sequences:

>Translated_352_residues
MQHNKISYLATVPLPERKQEGIAMKFNLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAKVTGIPWFTRMEVGVNEAAKK
LNVNAYQVGPATPDPAQQVKVIEDLIAKNVDAIIVVPNDAKVLEPVLKKAQEKGIVVLTHESPDQRIGQWDVETIDSEKY
AQANMDELAKAMGNKGGYAIYVGSLTVPLHNAWADYAIKYQKEKYPEMFEVTPRLPVAENIDKSYSTTLDLMKTYPQMKG
IIGFGSLGPIGAGQAVAKKRAKDQIAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGFAVVEIANQLLNGQKVTEDLTID
GLGKADVDSKNGVIRFNKILEVTKDNAKTLGF
>Mature_352_residues
MQHNKISYLATVPLPERKQEGIAMKFNLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAKVTGIPWFTRMEVGVNEAAKK
LNVNAYQVGPATPDPAQQVKVIEDLIAKNVDAIIVVPNDAKVLEPVLKKAQEKGIVVLTHESPDQRIGQWDVETIDSEKY
AQANMDELAKAMGNKGGYAIYVGSLTVPLHNAWADYAIKYQKEKYPEMFEVTPRLPVAENIDKSYSTTLDLMKTYPQMKG
IIGFGSLGPIGAGQAVAKKRAKDQIAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGFAVVEIANQLLNGQKVTEDLTID
GLGKADVDSKNGVIRFNKILEVTKDNAKTLGF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=306, Percent_Identity=28.1045751633987, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38419; Mature: 38419

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHNKISYLATVPLPERKQEGIAMKFNLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAK
CCCCEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
VTGIPWFTRMEVGVNEAAKKLNVNAYQVGPATPDPAQQVKVIEDLIAKNVDAIIVVPNDA
ECCCCCEEEEECCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCH
KVLEPVLKKAQEKGIVVLTHESPDQRIGQWDVETIDSEKYAQANMDELAKAMGNKGGYAI
HHHHHHHHHHHHCCEEEEECCCCHHHCCCCCHHHCCCHHHHHCCHHHHHHHHCCCCCEEE
YVGSLTVPLHNAWADYAIKYQKEKYPEMFEVTPRLPVAENIDKSYSTTLDLMKTYPQMKG
EEEEEEEEHHHHHHHHHEEECHHCCCHHEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCC
IIGFGSLGPIGAGQAVAKKRAKDQIAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGFAV
EEECCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCHHHCCCCHHHEECCCCCCCHH
VEIANQLLNGQKVTEDLTIDGLGKADVDSKNGVIRFNKILEVTKDNAKTLGF
HHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQHNKISYLATVPLPERKQEGIAMKFNLALLNVCIVSACMLFTTQTLAAEKKHEIAVVAK
CCCCEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
VTGIPWFTRMEVGVNEAAKKLNVNAYQVGPATPDPAQQVKVIEDLIAKNVDAIIVVPNDA
ECCCCCEEEEECCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCH
KVLEPVLKKAQEKGIVVLTHESPDQRIGQWDVETIDSEKYAQANMDELAKAMGNKGGYAI
HHHHHHHHHHHHCCEEEEECCCCHHHCCCCCHHHCCCHHHHHCCHHHHHHHHCCCCCEEE
YVGSLTVPLHNAWADYAIKYQKEKYPEMFEVTPRLPVAENIDKSYSTTLDLMKTYPQMKG
EEEEEEEEHHHHHHHHHEEECHHCCCHHEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCC
IIGFGSLGPIGAGQAVAKKRAKDQIAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGFAV
EEECCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCHHHCCCCHHHEECCCCCCCHH
VEIANQLLNGQKVTEDLTIDGLGKADVDSKNGVIRFNKILEVTKDNAKTLGF
HHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA