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The map label for this gene is ytfM [H]

Identifier: 218930538

GI number: 218930538

Start: 3935283

End: 3937019

Strand: Reverse

Name: ytfM [H]

Synonym: YPO3524

Alternate gene names: 218930538

Gene position: 3937019-3935283 (Counterclockwise)

Preceding gene: 218930541

Following gene: 218930537

Centisome position: 84.6

GC content: 51.35

Gene sequence:

>1737_bases
GTGCTACGATACCCTATTCTGTGTTTTGTGTGTCTATTGCTCGCCACACCTATCGCCTATGCCGCCAATGTGCGGCTACA
GGTTGAGGGTCTTAGCGGTGATTTAGAAAGAAACGTCAGGGCACGTTTGTCCACAATTGGCACTGATGAAGTTACCGCAG
ATGGCCGTTTTCGTTCACGGGTCGATGAAGCTATTCGGCAGGGGCTGCGCGCATTAGGTTATTACGATCCCACCATTACG
TTTGAATTACAAAACCGCCCGGCACCCGCACGTTCAGTGTTAATTGCAAAAGTGGTTCCTGGCGAGCCGGTATTGATTGC
CGGTGTCGATATCGTACTGCAAGGCGGTGCGAAAACGGATCCTGATTATCAGGCACTCGTTCGCCGTGATACCCCGAAAA
TTGGCTCGGTCCTCAACCATGGTGATTTTGATAATTTCACCAGTTCTCTTACTGGTTTAGCGTTACGCCGTGGCTATTTC
GACGCCAATATGATCAAAAGCCAGCTCGGTGTTGCCGCTCAATTACACGAGGCGTTCTGGGATATTGATTTCGACAGTGG
GCAACGTTACCGCTTTGGTAAGGTTATTTTCCAAGGCTCACAAATCCGAGAGGATTATCTGCAGAATTTAGTGCCGTTCC
ATGAGGGGGAATTCTATACCTCTGATGAACTGGCCGAGTTGAACCGCCGCTTGGCAGCCACCAACTGGTTTAACTCGGTG
GTTGTTTCGCCGGATTTCCAAGATGCCAAAGAGAGTAAAATTTTACCGCTTGATGCGGTCGTTACCCCACGCACTGAGAA
TACCGTCGAACTGGGGGGCGGTTATGCAACCGATGTCGGTCCGCGTCTGACCGCCAGTTGGCGTAAGCCTTGGATGAACT
CCTTCGGGCATAGCTTAACCACCACTACCGCGCTTTCGGCACCTGAGCAGACACTGGATTTCAGCTACCGTATTCCTTTA
TTGAGAAACCCCCTCGAGCAGTATTACCTGATACAAGGGGGCTTTAGACGTACCGACTTAAACGACACTAATTCAGATAC
CACGACCTTGAACGTTGCACGTTTTTGGGATCTCTCCAGCGGCTGGCAAAGGGCGATTAACCTGCGTTGGAGCCTCGATC
ACTTTACCCAAGGCAGAGTCACGGATACCACGATGTTGCTGTATCCGGGGGTGAGTATTAATCGTACCCGCCAACGTGGT
GGGGCGATGCCGGTCTGGGGGGATAGCCAGCGCTATTCTATTGATGTGTCTGATACGACTTGGGGGTCGGATGTTGATTT
TGGCATCTTTCAGGCGCAGAACGTGTGGATCCGGACCTTAGGTGAGAAAAATCGTTTTGTGGCGCGTGGCAATGTGGGGT
GGATCGAAACCAATAATTTTGACCGTGTTCCACCGTCGCTGCGTTTCTTCGCCGGGGGCGACCGCAGTATCCGTGGCTAT
AAATTCCGTAATATTTCACCGCGTGATAGTGACGGAAAATTAACCGGGGCTTCCAAGTTGGCAACGGGCTCTCTTGAATA
TCAATATAACTTCACGGGTAGATGGTGGGGGGCCGTTTTCGTCGATTCGGGCGAGGCGGTGAATAATTTCAGCAAGAGTG
ACTTAAAAACAGGGGCAGGTGTCGGGGTACGTTGGGCATCACCCGTTGGACCGATCAAACTGGATATCGCGGCACCAATA
GGCGATAACGAGACACATGGCGTGCAATTTTACATCGGTTTGGGGCCTGAACTATGA

Upstream 100 bases:

>100_bases
ATCGTCTTTAAGCTTAGAGGATTATTGTGTGAGTAACGCCACTCTCCTCTGAAACCCTTGAGCGTGTTTGACAGGAACGT
AAAATTAATCAGGAGTACGC

Downstream 100 bases:

>100_bases
AGTGGGTAAAGAGACTCAGTATTGCATTCTTGCTGATTATCCTGCTATTGGTCGGTGCTCTGGGGGGGTTACTCGGTACG
ACCAGTGGGTTACATTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 578; Mature: 578

Protein sequence:

>578_residues
MLRYPILCFVCLLLATPIAYAANVRLQVEGLSGDLERNVRARLSTIGTDEVTADGRFRSRVDEAIRQGLRALGYYDPTIT
FELQNRPAPARSVLIAKVVPGEPVLIAGVDIVLQGGAKTDPDYQALVRRDTPKIGSVLNHGDFDNFTSSLTGLALRRGYF
DANMIKSQLGVAAQLHEAFWDIDFDSGQRYRFGKVIFQGSQIREDYLQNLVPFHEGEFYTSDELAELNRRLAATNWFNSV
VVSPDFQDAKESKILPLDAVVTPRTENTVELGGGYATDVGPRLTASWRKPWMNSFGHSLTTTTALSAPEQTLDFSYRIPL
LRNPLEQYYLIQGGFRRTDLNDTNSDTTTLNVARFWDLSSGWQRAINLRWSLDHFTQGRVTDTTMLLYPGVSINRTRQRG
GAMPVWGDSQRYSIDVSDTTWGSDVDFGIFQAQNVWIRTLGEKNRFVARGNVGWIETNNFDRVPPSLRFFAGGDRSIRGY
KFRNISPRDSDGKLTGASKLATGSLEYQYNFTGRWWGAVFVDSGEAVNNFSKSDLKTGAGVGVRWASPVGPIKLDIAAPI
GDNETHGVQFYIGLGPEL

Sequences:

>Translated_578_residues
MLRYPILCFVCLLLATPIAYAANVRLQVEGLSGDLERNVRARLSTIGTDEVTADGRFRSRVDEAIRQGLRALGYYDPTIT
FELQNRPAPARSVLIAKVVPGEPVLIAGVDIVLQGGAKTDPDYQALVRRDTPKIGSVLNHGDFDNFTSSLTGLALRRGYF
DANMIKSQLGVAAQLHEAFWDIDFDSGQRYRFGKVIFQGSQIREDYLQNLVPFHEGEFYTSDELAELNRRLAATNWFNSV
VVSPDFQDAKESKILPLDAVVTPRTENTVELGGGYATDVGPRLTASWRKPWMNSFGHSLTTTTALSAPEQTLDFSYRIPL
LRNPLEQYYLIQGGFRRTDLNDTNSDTTTLNVARFWDLSSGWQRAINLRWSLDHFTQGRVTDTTMLLYPGVSINRTRQRG
GAMPVWGDSQRYSIDVSDTTWGSDVDFGIFQAQNVWIRTLGEKNRFVARGNVGWIETNNFDRVPPSLRFFAGGDRSIRGY
KFRNISPRDSDGKLTGASKLATGSLEYQYNFTGRWWGAVFVDSGEAVNNFSKSDLKTGAGVGVRWASPVGPIKLDIAAPI
GDNETHGVQFYIGLGPEL
>Mature_578_residues
MLRYPILCFVCLLLATPIAYAANVRLQVEGLSGDLERNVRARLSTIGTDEVTADGRFRSRVDEAIRQGLRALGYYDPTIT
FELQNRPAPARSVLIAKVVPGEPVLIAGVDIVLQGGAKTDPDYQALVRRDTPKIGSVLNHGDFDNFTSSLTGLALRRGYF
DANMIKSQLGVAAQLHEAFWDIDFDSGQRYRFGKVIFQGSQIREDYLQNLVPFHEGEFYTSDELAELNRRLAATNWFNSV
VVSPDFQDAKESKILPLDAVVTPRTENTVELGGGYATDVGPRLTASWRKPWMNSFGHSLTTTTALSAPEQTLDFSYRIPL
LRNPLEQYYLIQGGFRRTDLNDTNSDTTTLNVARFWDLSSGWQRAINLRWSLDHFTQGRVTDTTMLLYPGVSINRTRQRG
GAMPVWGDSQRYSIDVSDTTWGSDVDFGIFQAQNVWIRTLGEKNRFVARGNVGWIETNNFDRVPPSLRFFAGGDRSIRGY
KFRNISPRDSDGKLTGASKLATGSLEYQYNFTGRWWGAVFVDSGEAVNNFSKSDLKTGAGVGVRWASPVGPIKLDIAAPI
GDNETHGVQFYIGLGPEL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=573, Percent_Identity=71.2041884816754, Blast_Score=869, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 64406; Mature: 64406

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYPILCFVCLLLATPIAYAANVRLQVEGLSGDLERNVRARLSTIGTDEVTADGRFRSR
CCCCHHHHHHHHHHHCCHHEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCEECCCHHHHH
VDEAIRQGLRALGYYDPTITFELQNRPAPARSVLIAKVVPGEPVLIAGVDIVLQGGAKTD
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCC
PDYQALVRRDTPKIGSVLNHGDFDNFTSSLTGLALRRGYFDANMIKSQLGVAAQLHEAFW
CHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHE
DIDFDSGQRYRFGKVIFQGSQIREDYLQNLVPFHEGEFYTSDELAELNRRLAATNWFNSV
ECCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHCCCCCEE
VVSPDFQDAKESKILPLDAVVTPRTENTVELGGGYATDVGPRLTASWRKPWMNSFGHSLT
EECCCCCCCCCCCCCEECEEECCCCCCEEEECCCEECCCCCCCCHHHHHHHHHHHCCCCE
TTTALSAPEQTLDFSYRIPLLRNPLEQYYLIQGGFRRTDLNDTNSDTTTLNVARFWDLSS
EEEECCCCHHHCCEEEECCHHHCCHHHEEEECCCCEECCCCCCCCCCEEEEEEEEECCCC
GWQRAINLRWSLDHFTQGRVTDTTMLLYPGVSINRTRQRGGAMPVWGDSQRYSIDVSDTT
CCHHEEEEEEECCCCCCCCEECEEEEEECCCCCCCHHHCCCCCCCCCCCCEEEEEECCCC
WGSDVDFGIFQAQNVWIRTLGEKNRFVARGNVGWIETNNFDRVPPSLRFFAGGDRSIRGY
CCCCCCCEEEEECCEEEEECCCCCCEEEECCEEEEECCCCCCCCCCEEEEECCCCCCCCE
KFRNISPRDSDGKLTGASKLATGSLEYQYNFTGRWWGAVFVDSGEAVNNFSKSDLKTGAG
EECCCCCCCCCCCEECCCCEEECCEEEEEEECEEEEEEEEEECCHHHHCCCHHHCCCCCC
VGVRWASPVGPIKLDIAAPIGDNETHGVQFYIGLGPEL
CCEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MLRYPILCFVCLLLATPIAYAANVRLQVEGLSGDLERNVRARLSTIGTDEVTADGRFRSR
CCCCHHHHHHHHHHHCCHHEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCEECCCHHHHH
VDEAIRQGLRALGYYDPTITFELQNRPAPARSVLIAKVVPGEPVLIAGVDIVLQGGAKTD
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCC
PDYQALVRRDTPKIGSVLNHGDFDNFTSSLTGLALRRGYFDANMIKSQLGVAAQLHEAFW
CHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHE
DIDFDSGQRYRFGKVIFQGSQIREDYLQNLVPFHEGEFYTSDELAELNRRLAATNWFNSV
ECCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHCCCCCEE
VVSPDFQDAKESKILPLDAVVTPRTENTVELGGGYATDVGPRLTASWRKPWMNSFGHSLT
EECCCCCCCCCCCCCEECEEECCCCCCEEEECCCEECCCCCCCCHHHHHHHHHHHCCCCE
TTTALSAPEQTLDFSYRIPLLRNPLEQYYLIQGGFRRTDLNDTNSDTTTLNVARFWDLSS
EEEECCCCHHHCCEEEECCHHHCCHHHEEEECCCCEECCCCCCCCCCEEEEEEEEECCCC
GWQRAINLRWSLDHFTQGRVTDTTMLLYPGVSINRTRQRGGAMPVWGDSQRYSIDVSDTT
CCHHEEEEEEECCCCCCCCEECEEEEEECCCCCCCHHHCCCCCCCCCCCCEEEEEECCCC
WGSDVDFGIFQAQNVWIRTLGEKNRFVARGNVGWIETNNFDRVPPSLRFFAGGDRSIRGY
CCCCCCCEEEEECCEEEEECCCCCCEEEECCEEEEECCCCCCCCCCEEEEECCCCCCCCE
KFRNISPRDSDGKLTGASKLATGSLEYQYNFTGRWWGAVFVDSGEAVNNFSKSDLKTGAG
EECCCCCCCCCCCEECCCCEEECCEEEEEEECEEEEEEEEEECCHHHHCCCHHHCCCCCC
VGVRWASPVGPIKLDIAAPIGDNETHGVQFYIGLGPEL
CCEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]