Click here to switch to the map view.

The map label for this gene is yhbQ [C]

Identifier: 218930489

GI number: 218930489

Start: 3883011

End: 3883298

Strand: Direct

Name: yhbQ [C]

Synonym: YPO3475

Alternate gene names: 218930489

Gene position: 3883011-3883298 (Clockwise)

Preceding gene: 218930488

Following gene: 218930492

Centisome position: 83.44

GC content: 52.08

Gene sequence:

>288_bases
ATGTCAGATAGCCTTTGGCATCTCTATTTGCTGCGTACCGCCAGTGGCATGCTCTATACCGGTATTACCACCGATGTAGC
ACGGCGGTTGGCACAGCATCAGGCGGGGAAAGGGGCAAAAGCGCTGCGGGGCAAAGGGGAGTTAACGTTGGTATTTCATT
GTGAAGCGGGCGACCGTTCGACCGCCTTAAAGCTGGAGTACCGCGTCAAGCAGCTCAGTAAACAGCAAAAAGAAAAGCTG
GTGATTGACCAGCCGAGGTTATTGACAACGCTATTTTTAGACTCGTGA

Upstream 100 bases:

>100_bases
GCATTAACCCGATTGGCGACGGGCAGATAAAAAGTCAGGATGCAATACGCTGTTCCGGTGATAACATGCCGAACCGTTAC
CCTCGGACTGGAATAAGATT

Downstream 100 bases:

>100_bases
ATGAAGGGTTGACCGCACCTCGGGGCACTCCGGTGGCTTACGCCACTACGACCCCAACGGCACGTTTCCCCTTCAATTGA
CTTTGTCAGCAGTCTGAGCT

Product: GIY-YIG nuclease superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MSDSLWHLYLLRTASGMLYTGITTDVARRLAQHQAGKGAKALRGKGELTLVFHCEAGDRSTALKLEYRVKQLSKQQKEKL
VIDQPRLLTTLFLDS

Sequences:

>Translated_95_residues
MSDSLWHLYLLRTASGMLYTGITTDVARRLAQHQAGKGAKALRGKGELTLVFHCEAGDRSTALKLEYRVKQLSKQQKEKL
VIDQPRLLTTLFLDS
>Mature_94_residues
SDSLWHLYLLRTASGMLYTGITTDVARRLAQHQAGKGAKALRGKGELTLVFHCEAGDRSTALKLEYRVKQLSKQQKEKLV
IDQPRLLTTLFLDS

Specific function: Unknown

COG id: COG2827

COG function: function code L; Predicted endonuclease containing a URI domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0213 family

Homologues:

Organism=Escherichia coli, GI1789545, Length=78, Percent_Identity=73.0769230769231, Blast_Score=118, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2977_YERPA (Q1C3N3)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_652884.1
- ProteinModelPortal:   Q1C3N3
- SMR:   Q1C3N3
- STRING:   Q1C3N3
- GeneID:   4119326
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_2977
- eggNOG:   COG2827
- HOGENOM:   HBG678874
- OMA:   GSLYCGI
- ProtClustDB:   PRK00329
- BioCyc:   YPES360102:YPA_2977-MONOMER
- GO:   GO:0005622
- HAMAP:   MF_01029
- InterPro:   IPR022992
- InterPro:   IPR000305

Pfam domain/function: PF01541 GIY-YIG; SSF82771 UvrC_N

EC number: NA

Molecular weight: Translated: 10688; Mature: 10556

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSLWHLYLLRTASGMLYTGITTDVARRLAQHQAGKGAKALRGKGELTLVFHCEAGDRS
CCCCCEEHHEEECCCCEEEECCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCC
TALKLEYRVKQLSKQQKEKLVIDQPRLLTTLFLDS
EEEEHHHHHHHHHHHHHHCEECCCCCEEEEEEECC
>Mature Secondary Structure 
SDSLWHLYLLRTASGMLYTGITTDVARRLAQHQAGKGAKALRGKGELTLVFHCEAGDRS
CCCCEEHHEEECCCCEEEECCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCC
TALKLEYRVKQLSKQQKEKLVIDQPRLLTTLFLDS
EEEEHHHHHHHHHHHHHHCEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA