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The map label for this gene is cybC

Identifier: 218930341

GI number: 218930341

Start: 3704026

End: 3704409

Strand: Direct

Name: cybC

Synonym: YPO3320

Alternate gene names: 218930341

Gene position: 3704026-3704409 (Clockwise)

Preceding gene: 218930340

Following gene: 218930342

Centisome position: 79.59

GC content: 39.84

Gene sequence:

>384_bases
ATGCGAAAAATTCCAATAATTGCGGGCGTTTTCTCATTACTCATCACAAGTTGTACTTTTGCCGCGAGCCTTCAGGATGA
TATGAATATTCTGATAGCCAATTTGGGCATTGTAAGTTCATCAACCGATACAAAGGTCATTACCTCATCACTGGAAAAAA
TGCGTAATGCCGCCCTTGATGCTCAAAAAGCCATTCCACCCAAGCTTGAAGGGAAAGCCGAGGACAGTCCGGAAATAAAA
GACTATCGGCATGGTTTTGATCTACTAATAGAACAAATAGACAAAACCAAACAATGGGCGGAAGAAGGAAATATTCAGGA
GGTAAAAAAATCGGTTGGGGAAGTAATCAACATTCGTAATACCTATCATAGTAGATATCGTTAA

Upstream 100 bases:

>100_bases
CGCTTTGATATAAAAAATAACTAACTAAATAGAGGGGAGGATTTATCTTCCCCCCTCTATTTATAAGAGAAGAAAATCAT
AATAATAAGAGGTAACGATA

Downstream 100 bases:

>100_bases
AATTTTATTAATTCATAGAGGAGTATTGAATATATCTCCAGACAGGTATTTATATAAAATAATTATATACCCAAGTGACT
TCAAGATGCAGGTAGGCAGC

Product: putative cytochrome B562

Products: reduced cytochrome b [C]

Alternate protein names: Cytochrome b-562 1

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MRKIPIIAGVFSLLITSCTFAASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALDAQKAIPPKLEGKAEDSPEIK
DYRHGFDLLIEQIDKTKQWAEEGNIQEVKKSVGEVINIRNTYHSRYR

Sequences:

>Translated_127_residues
MRKIPIIAGVFSLLITSCTFAASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALDAQKAIPPKLEGKAEDSPEIK
DYRHGFDLLIEQIDKTKQWAEEGNIQEVKKSVGEVINIRNTYHSRYR
>Mature_127_residues
MRKIPIIAGVFSLLITSCTFAASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALDAQKAIPPKLEGKAEDSPEIK
DYRHGFDLLIEQIDKTKQWAEEGNIQEVKKSVGEVINIRNTYHSRYR

Specific function: Electron-transport protein of unknown function

COG id: COG3783

COG function: function code C; Soluble cytochrome b562

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b562 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): C5621_YERPE (Q9X6B1)

Other databases:

- EMBL:   AF135170
- EMBL:   AL590842
- EMBL:   AE009952
- EMBL:   AE017042
- PIR:   AD0403
- RefSeq:   NP_668203.1
- RefSeq:   NP_991762.1
- RefSeq:   YP_002348216.1
- ProteinModelPortal:   Q9X6B1
- SMR:   Q9X6B1
- GeneID:   1145816
- GeneID:   1176139
- GeneID:   2766111
- GenomeReviews:   AE009952_GR
- GenomeReviews:   AE017042_GR
- GenomeReviews:   AL590842_GR
- KEGG:   ype:YPO3320
- KEGG:   ypk:y0869
- KEGG:   ypm:YP_0366
- HOGENOM:   HBG416794
- OMA:   REHVEHA
- ProtClustDB:   CLSK889462
- BioCyc:   YPES187410:Y0869-MONOMER
- BioCyc:   YPES214092:YPO3320-MONOMER
- GO:   GO:0006810
- InterPro:   IPR009155
- InterPro:   IPR010980
- Gene3D:   G3DSA:1.20.120.10
- PIRSF:   PIRSF000029

Pfam domain/function: PF07361 Cytochrom_B562; SSF47175 Cyt_c_b562

EC number: NA

Molecular weight: Translated: 14192; Mature: 14192

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIPIIAGVFSLLITSCTFAASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
AQKAIPPKLEGKAEDSPEIKDYRHGFDLLIEQIDKTKQWAEEGNIQEVKKSVGEVINIRN
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TYHSRYR
HHHHCCC
>Mature Secondary Structure
MRKIPIIAGVFSLLITSCTFAASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
AQKAIPPKLEGKAEDSPEIKDYRHGFDLLIEQIDKTKQWAEEGNIQEVKKSVGEVINIRN
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TYHSRYR
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: cytochrome b oxidized; Electron [C]

Specific reaction: cytochrome b oxidized + 2 Electron = reduced cytochrome b [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10322012; 11586360; 12142430