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The map label for this gene is deoR [H]

Identifier: 218930331

GI number: 218930331

Start: 3690760

End: 3691704

Strand: Direct

Name: deoR [H]

Synonym: YPO3310

Alternate gene names: 218930331

Gene position: 3690760-3691704 (Clockwise)

Preceding gene: 218930330

Following gene: 218930340

Centisome position: 79.31

GC content: 47.83

Gene sequence:

>945_bases
ATGTCAAGACAAGATGAACAACGGTTACTGGTCAAGATTGCCACGCTGTATTACACCGAAGGTATGAAGCAATCCGAGAT
TGCTGATAGCCTGCATTTATCTCAATCCTTCGTGTCTCGTGCGATAACGCGGTGTGTCAAAGAAGGTGTGGTTAAAATCA
GTGTGATTCAACCCGCTAATATGTTTATTGGTATCGAATCACGTATTCAAAAACACTATGGTATAGATCAGGCCATTGTG
GTGGATATTACCGATGACGCCAGCCCCGCACAGATAAAACAGGCTATTGGCTCAGCTGCCGCCCATTATATGCAAACCAG
TATTCGTCCAAACGATATGGTGGGTATTTCTTCATGGAGCAGTACCATCCGGGCGATGGTCGATAACCTTCATCCCCTCA
ATATCAAAACCAGTGGCGTGATTCAATTGCTCGGAGGTGTCGGCCCTAACGGCAACGTGCAGGCCACATTGTTAACTCAA
TCATTGGCAAATATTTTAAACTGCCCTGCCTATCTCCTGCCCGCACAAAGCATTGAACGTTCTACTGAAGATCGTGCCCG
CCTGATATCCAGTGGTGAAGTGGCCGATGTCGTGAATAAATTTGCCGAAGTTGATCTGGCATTAGTGGGGATCGGTGTTC
TGGAACCCTCCCAATTACTGAAAAATTCCGGCAACTATTACCACGAAGAGATGCTGAAATTACTGGCCGAACGCGGGGCT
GTGGGGGATTTGTGTTTACATTATTTTGATGCCGCGGGCAATGCGGTACTCAGCGATGAGGAAGACCCAGTCATTGGAAT
GTCATTACCCCAATTACGTGCTTGCCCACGGGTCGTGGCACTGGCTGGGGGGATAGAGAAAAGTGCTGCTATTCGAGGTG
CACTGACCGGTAACTACATTGATGTGCTAATTACCGACCGGCTGACAGCAGAAACATTACTCTAG

Upstream 100 bases:

>100_bases
CAATAATATGCAGTTAAGCTACAGGCAAATCGTGTACTGCTTGTTATTTATTCAGCATTGAATAAAAATACCAGCATGAG
GTATTTAGCGGGATGGAACC

Downstream 100 bases:

>100_bases
CCACCCTGCCAACATATTGGTTAACAGCCCCAGCCATGGGGCGGACACTTTACTCTTCTGCTTATCCTCACCGTTCAAGA
TCGCGTCATTGGGGTTTGTC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSRQDEQRLLVKIATLYYTEGMKQSEIADSLHLSQSFVSRAITRCVKEGVVKISVIQPANMFIGIESRIQKHYGIDQAIV
VDITDDASPAQIKQAIGSAAAHYMQTSIRPNDMVGISSWSSTIRAMVDNLHPLNIKTSGVIQLLGGVGPNGNVQATLLTQ
SLANILNCPAYLLPAQSIERSTEDRARLISSGEVADVVNKFAEVDLALVGIGVLEPSQLLKNSGNYYHEEMLKLLAERGA
VGDLCLHYFDAAGNAVLSDEEDPVIGMSLPQLRACPRVVALAGGIEKSAAIRGALTGNYIDVLITDRLTAETLL

Sequences:

>Translated_314_residues
MSRQDEQRLLVKIATLYYTEGMKQSEIADSLHLSQSFVSRAITRCVKEGVVKISVIQPANMFIGIESRIQKHYGIDQAIV
VDITDDASPAQIKQAIGSAAAHYMQTSIRPNDMVGISSWSSTIRAMVDNLHPLNIKTSGVIQLLGGVGPNGNVQATLLTQ
SLANILNCPAYLLPAQSIERSTEDRARLISSGEVADVVNKFAEVDLALVGIGVLEPSQLLKNSGNYYHEEMLKLLAERGA
VGDLCLHYFDAAGNAVLSDEEDPVIGMSLPQLRACPRVVALAGGIEKSAAIRGALTGNYIDVLITDRLTAETLL
>Mature_313_residues
SRQDEQRLLVKIATLYYTEGMKQSEIADSLHLSQSFVSRAITRCVKEGVVKISVIQPANMFIGIESRIQKHYGIDQAIVV
DITDDASPAQIKQAIGSAAAHYMQTSIRPNDMVGISSWSSTIRAMVDNLHPLNIKTSGVIQLLGGVGPNGNVQATLLTQS
LANILNCPAYLLPAQSIERSTEDRARLISSGEVADVVNKFAEVDLALVGIGVLEPSQLLKNSGNYYHEEMLKLLAERGAV
GDLCLHYFDAAGNAVLSDEEDPVIGMSLPQLRACPRVVALAGGIEKSAAIRGALTGNYIDVLITDRLTAETLL

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=317, Percent_Identity=27.7602523659306, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87082414, Length=321, Percent_Identity=27.7258566978193, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 33813; Mature: 33682

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQDEQRLLVKIATLYYTEGMKQSEIADSLHLSQSFVSRAITRCVKEGVVKISVIQPAN
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCH
MFIGIESRIQKHYGIDQAIVVDITDDASPAQIKQAIGSAAAHYMQTSIRPNDMVGISSWS
HEEEHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHH
STIRAMVDNLHPLNIKTSGVIQLLGGVGPNGNVQATLLTQSLANILNCPAYLLPAQSIER
HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCHHCCCHHHHHC
STEDRARLISSGEVADVVNKFAEVDLALVGIGVLEPSQLLKNSGNYYHEEMLKLLAERGA
CHHHHHHHHCCCCHHHHHHHHHHHHHHEEEECCCCHHHHHHCCCCHHHHHHHHHHHHCCC
VGDLCLHYFDAAGNAVLSDEEDPVIGMSLPQLRACPRVVALAGGIEKSAAIRGALTGNYI
HHHHHHHHHHHCCCCEECCCCCCEECCCCHHHHHCHHHHHHHCCCCHHHHHHHCCCCCEE
DVLITDRLTAETLL
EEEEECCHHHHHCC
>Mature Secondary Structure 
SRQDEQRLLVKIATLYYTEGMKQSEIADSLHLSQSFVSRAITRCVKEGVVKISVIQPAN
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCH
MFIGIESRIQKHYGIDQAIVVDITDDASPAQIKQAIGSAAAHYMQTSIRPNDMVGISSWS
HEEEHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHH
STIRAMVDNLHPLNIKTSGVIQLLGGVGPNGNVQATLLTQSLANILNCPAYLLPAQSIER
HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCHHCCCHHHHHC
STEDRARLISSGEVADVVNKFAEVDLALVGIGVLEPSQLLKNSGNYYHEEMLKLLAERGA
CHHHHHHHHCCCCHHHHHHHHHHHHHHEEEECCCCHHHHHHCCCCHHHHHHHHHHHHCCC
VGDLCLHYFDAAGNAVLSDEEDPVIGMSLPQLRACPRVVALAGGIEKSAAIRGALTGNYI
HHHHHHHHHHHCCCCEECCCCCCEECCCCHHHHHCHHHHHHHCCCCHHHHHHHCCCCCEE
DVLITDRLTAETLL
EEEEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]