Click here to switch to the map view.

The map label for this gene is ybaP [H]

Identifier: 218930132

GI number: 218930132

Start: 3444896

End: 3445705

Strand: Direct

Name: ybaP [H]

Synonym: YPO3087

Alternate gene names: 218930132

Gene position: 3444896-3445705 (Clockwise)

Preceding gene: 218930131

Following gene: 218930133

Centisome position: 74.02

GC content: 49.88

Gene sequence:

>810_bases
ATGGACAAACTCTTACGCCGTATCGCAAAATTCTTGGGCATTATTACACCCACCACCTATGCTTACCCGGCTTTGGATAT
CACGCTACCTGGCGAGCGCCACCTACATTTAGTTGGCAGCATTCATATGGGAACGGCAGGGATGTTTCCCCTCCCCCACA
CGCTACTGAATAAATTGAATCAGGCTGACGCTCTCATTGTTGAAGCGGATATCACCGACGCAACCTCTTCTTTTGGCCAT
AGCACGGTTACTGAACCTTTAGTCGACAGATTATCTGAGGAATATTATCCGCAACTCCAGCGACGCTGTGAAGAACTGGG
GAGTGACCCACTGGCGATGACCTATCTCCCGGCATGGCAAGTCGCGTTAATGTTGCAGGCACATCAGGCTCAACGTTTGG
GGTTGCGTGGGGAATATGGCATTGATTATCAACTACTGAAAGCCGCAGGGGCGCAGGAGAAAGAGATTATTGAACTGGAA
GGGGCTGAAATGCAGCTTGATTTACTCAAAACCTTACCGGATAACGGCATCTCTTTACTGCACGACACCCTTCTCCATTG
GCATACCAATGCCCGCCTGCTACAAACCATGATTGGCTGGTGGCTAGAGCACCAGCCTGAAAAGTATCAGGCAACTCTCG
CCCCGACTTTCAGCCACGATATGTATGATGTACTGATGCTTCAGCGCAATAAACGTTGGCAGCAACAGCTCGAACAACTC
GCCCCCGGACGTTATGTCGTTGCTGTAGGTGCATTACATTTGTACGGTGAAGGGAATCTTCCAGAGCTGTTACGAGCCGA
CAATCAATAA

Upstream 100 bases:

>100_bases
ACGTCAGTGATTCGGGTGAGTGAGTGCCGCTAACAACGCTGCAATTTCAAGTAAGAAGGGTATAGCATACAGAAAATGCT
AATAAAGGAGCCAAACTAAC

Downstream 100 bases:

>100_bases
AAAAATGGCCGATATCACTACCGGCCAGTCAAAGAGGAATTTTCATTATTTTTGTTATTAAGCACTCACACTCCTTGCGG
ATAATGTGAGCGCCAGCATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MDKLLRRIAKFLGIITPTTYAYPALDITLPGERHLHLVGSIHMGTAGMFPLPHTLLNKLNQADALIVEADITDATSSFGH
STVTEPLVDRLSEEYYPQLQRRCEELGSDPLAMTYLPAWQVALMLQAHQAQRLGLRGEYGIDYQLLKAAGAQEKEIIELE
GAEMQLDLLKTLPDNGISLLHDTLLHWHTNARLLQTMIGWWLEHQPEKYQATLAPTFSHDMYDVLMLQRNKRWQQQLEQL
APGRYVVAVGALHLYGEGNLPELLRADNQ

Sequences:

>Translated_269_residues
MDKLLRRIAKFLGIITPTTYAYPALDITLPGERHLHLVGSIHMGTAGMFPLPHTLLNKLNQADALIVEADITDATSSFGH
STVTEPLVDRLSEEYYPQLQRRCEELGSDPLAMTYLPAWQVALMLQAHQAQRLGLRGEYGIDYQLLKAAGAQEKEIIELE
GAEMQLDLLKTLPDNGISLLHDTLLHWHTNARLLQTMIGWWLEHQPEKYQATLAPTFSHDMYDVLMLQRNKRWQQQLEQL
APGRYVVAVGALHLYGEGNLPELLRADNQ
>Mature_269_residues
MDKLLRRIAKFLGIITPTTYAYPALDITLPGERHLHLVGSIHMGTAGMFPLPHTLLNKLNQADALIVEADITDATSSFGH
STVTEPLVDRLSEEYYPQLQRRCEELGSDPLAMTYLPAWQVALMLQAHQAQRLGLRGEYGIDYQLLKAAGAQEKEIIELE
GAEMQLDLLKTLPDNGISLLHDTLLHWHTNARLLQTMIGWWLEHQPEKYQATLAPTFSHDMYDVLMLQRNKRWQQQLEQL
APGRYVVAVGALHLYGEGNLPELLRADNQ

Specific function: Unknown

COG id: COG3735

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786689, Length=262, Percent_Identity=56.4885496183206, Blast_Score=298, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010891 [H]

Pfam domain/function: PF07446 GumN [H]

EC number: NA

Molecular weight: Translated: 30450; Mature: 30450

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLLRRIAKFLGIITPTTYAYPALDITLPGERHLHLVGSIHMGTAGMFPLPHTLLNKLN
CHHHHHHHHHHHHHCCCCCEECCEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHCC
QADALIVEADITDATSSFGHSTVTEPLVDRLSEEYYPQLQRRCEELGSDPLAMTYLPAWQ
CCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHH
VALMLQAHQAQRLGLRGEYGIDYQLLKAAGAQEKEIIELEGAEMQLDLLKTLPDNGISLL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCHHHH
HDTLLHWHTNARLLQTMIGWWLEHQPEKYQATLAPTFSHDMYDVLMLQRNKRWQQQLEQL
HHHHHHHCCCHHHHHHHHHHHHHCCCCHHEEEECCCHHHHHHHHHHHHHCHHHHHHHHHH
APGRYVVAVGALHLYGEGNLPELLRADNQ
CCCCEEEEEEEEEEECCCCCHHHHCCCCC
>Mature Secondary Structure
MDKLLRRIAKFLGIITPTTYAYPALDITLPGERHLHLVGSIHMGTAGMFPLPHTLLNKLN
CHHHHHHHHHHHHHCCCCCEECCEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHCC
QADALIVEADITDATSSFGHSTVTEPLVDRLSEEYYPQLQRRCEELGSDPLAMTYLPAWQ
CCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHH
VALMLQAHQAQRLGLRGEYGIDYQLLKAAGAQEKEIIELEGAEMQLDLLKTLPDNGISLL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCHHHH
HDTLLHWHTNARLLQTMIGWWLEHQPEKYQATLAPTFSHDMYDVLMLQRNKRWQQQLEQL
HHHHHHHCCCHHHHHHHHHHHHHCCCCHHEEEECCCHHHHHHHHHHHHHCHHHHHHHHHH
APGRYVVAVGALHLYGEGNLPELLRADNQ
CCCCEEEEEEEEEEECCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]