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The map label for this gene is hcpA [H]

Identifier: 218929860

GI number: 218929860

Start: 3123130

End: 3123702

Strand: Reverse

Name: hcpA [H]

Synonym: YPO2793

Alternate gene names: 218929860

Gene position: 3123702-3123130 (Counterclockwise)

Preceding gene: 218929861

Following gene: 218929856

Centisome position: 67.12

GC content: 34.55

Gene sequence:

>573_bases
ATGTCTAATTTGATTTATGCAAGTGTTAATGGTAAAAAACAAGGTTTAATATCTGCCGGATGCTCGTCACTCAACTCTAT
TGGTAATCGGTGCCAGGCAGGTCATGAAGATCAAATACAGGTATTAAGTTTAAATCATAGTATAAGCCGCCAACAGAATG
TAGCTCATCACCCTGTTCATTTTGTTAAGCCTATAGATAAGTCATCTCCATTGCTAGGCGTGGCAATATCTGAAAATGAA
CGAATAAATGTTGTCTTTTATTTTTATAGAGTAAATTCTGCTGGGCAGTTGGAACTTTATTATGAAGTTAAACTGACAGA
TGCGAGTATTGTAGATATCACCAGTGTTTATCCACACTCAATAGATAATAATGAAATGATACCGTATGAAAAAATTCAAT
TAAAATATAAATCCATAGCGTGGGATCACAAAAGTGCGGGTACTTCTGGTTACAGTGTATGGGAAGATAGGGTTTACTCG
TTTCTGATATCAAGCACACTTTTTCAAGTGTGCTTGAACATATTTATATTCTTCAATTGGCTTGTTTACCAAAATTATTT
TTGGGAGAAGTAA

Upstream 100 bases:

>100_bases
TCATTGATTCTGCTGGAGAGGATTATCGGTTTATACTCAGGCTTGAAGTGCCGCCAATTTTGGAACGACAGCACTAACCT
CTATTACATAAGGAATTGTC

Downstream 100 bases:

>100_bases
GAGGCGGTTAACTATGGACATAGCTTTATATCTTTTACGTATTCATTAGGGGACATCCAAGATGATCTTGAGCATAGCTT
ATAACCATATTCGGTGAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENE
RINVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVYS
FLISSTLFQVCLNIFIFFNWLVYQNYFWEK

Sequences:

>Translated_190_residues
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENE
RINVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVYS
FLISSTLFQVCLNIFIFFNWLVYQNYFWEK
>Mature_189_residues
SNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENER
INVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVYSF
LISSTLFQVCLNIFIFFNWLVYQNYFWEK

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

Organism=Escherichia coli, GI1789850, Length=149, Percent_Identity=40.9395973154362, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 21740; Mature: 21609

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVH
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCCCCEE
FVKPIDKSSPLLGVAISENERINVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHS
EECCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCC
IDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVYSFLISSTLFQVCLNIFIFFNW
CCCCCCCCHHHHEEEEEHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVYQNYFWEK
HHHHHHHCCC
>Mature Secondary Structure 
SNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVH
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCCCCEE
FVKPIDKSSPLLGVAISENERINVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHS
EECCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCC
IDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVYSFLISSTLFQVCLNIFIFFNW
CCCCCCCCHHHHEEEEEHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVYQNYFWEK
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]