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The map label for this gene is cspB

Identifier: 218929733

GI number: 218929733

Start: 2984316

End: 2984528

Strand: Direct

Name: cspB

Synonym: YPO2659

Alternate gene names: 218929733

Gene position: 2984316-2984528 (Clockwise)

Preceding gene: 218929732

Following gene: 218929734

Centisome position: 64.13

GC content: 40.38

Gene sequence:

>213_bases
ATGTCTAATAAAATGACTGGTTTGGTAAAATGGTTTGATGCTGGTAAAGGTTTTGGTTTTATTTCTCCTGCAGATGGCAG
CAAAGATGTATTTGTACATTTCTCTGCAATCCAGGGTAATGACTACAAAACTCTTGATGAAGGCCAGAACGTTGAGTTCA
GCATCGAGCAAGGCCAAAAAGGCCCTTCAGCTGTAAACGTTGTAGCACTGTAA

Upstream 100 bases:

>100_bases
TCACTTCTCCGACGAATTACCTTCTTTTGTGCCCCCATAAGTAACTCAAGCAGACCTCAATTGCCATGTAGTGGCACAAA
ATAATGAAGGAAATATATTT

Downstream 100 bases:

>100_bases
TTCACATTACTGTTGTTAACGTTTAGCTGTAAATAGATTTAGAAGCCTCGTCTTTTGACGGGGTTTTTTTTATTATTTTT
TGGGGCGACAAAAATTGTAA

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGPSAVNVVAL

Sequences:

>Translated_70_residues
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGPSAVNVVAL
>Mature_69_residues
SNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGPSAVNVVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=77.1428571428572, Blast_Score=119, Evalue=5e-29,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=78.5714285714286, Blast_Score=114, Evalue=9e-28,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=77.9411764705882, Blast_Score=112, Evalue=5e-27,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=76.1194029850746, Blast_Score=108, Evalue=9e-26,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=72.8571428571428, Blast_Score=107, Evalue=1e-25,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=70.5882352941177, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=50, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=52.2388059701493, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=49.2537313432836, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSPB_YEREN (P0A363)

Other databases:

- EMBL:   AF070484
- ProteinModelPortal:   P0A363
- SMR:   P0A363
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7511; Mature: 7380

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQK
CCCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEEEECCCCEECCCCCCEEEEECCCCC
GPSAVNVVAL
CCCEEEEEEC
>Mature Secondary Structure 
SNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQK
CCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEEEECCCCEECCCCCCEEEEECCCCC
GPSAVNVVAL
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA