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The map label for this gene is fliD [H]

Identifier: 218928960

GI number: 218928960

Start: 2084964

End: 2086364

Strand: Reverse

Name: fliD [H]

Synonym: YPO1841

Alternate gene names: 218928960

Gene position: 2086364-2084964 (Counterclockwise)

Preceding gene: 218928968

Following gene: 218928959

Centisome position: 44.83

GC content: 46.54

Gene sequence:

>1401_bases
ATGGCAAGTATCAGTGCATTAGGTACCGGTTCAGGACTGGATTTAAATACATTGCTGTCACAATTATCGGCCGCAGAACA
GACACGCCTTACCCCGCTAACCACGCAGCAAACCAGTTATAAAAGCAAACTTACCGCTTATGGTGTTTTGCAAAGTGCGT
TGGCAAAGCTTGAAACCGCGTCTACCGCCCTGAAAAAAGCTGACACGTTGAACTCTACGGCAGTCAGCGGCAGCAATTCC
GCATTCAGCGCGACAACGGATAGTGCGGCCAGTGCAGGTACGTACAGTATTGAAGTCACCAATCTGGCCAAAGCACAATC
GCTGTTATCGGCAGATGTGCCTAGCGCTACAGATAAATTGGGTAGCAGTGATGCAACACGCACGATCACGATTACTCAAC
CCGGCCAAAAAGAGCCGATGAAAATCAGCCTGACCAGCGAGCAAACTTCGCTGACGGGTATCCGTGATGCTATTAATAAG
CAGGAAGGCAGTGTCAACGCCAGTATTATGAAAGCAGATGATAATACTTATTATCTGGCATTAACGTCGAAGGATACCGG
TACGCAATCAGAAATGACCATCAGTGTAGCGGGTGATGAAACCTTAAATAATTTCCTGAACTATACCCCCAGCAGCACCG
GCGGTAGTGGTGCGCTGACGCAAAAAGTCAAAGCGGAAGACGCCACCTTGAGTGTTAATGGTGTCAGTATTACCCGCCAA
AGTAATACCATTACCGATGCACCTCAGGGCGTCACCATCAATCTGAAAGCCGTCACCAAAGAGGGCGCGCCAGAGCAACT
GACTATTGTCCGTGACAACACGGCCACAAAGGCGGCGATCCAAAGTTTTGTCGATGCCTATAACTCATTACAAACCACCT
TCGGCTCACTGACCAAATATACCGTTGTAGAGACAGGCCAGGATCAATCCACGAGTAATGGTGCATTAGTCGGGGATGGC
ACATTGCGTTCTATCCAGACGCAATTAAAGAGCCAATTGGCCTCTAGTCAATCTGGGGATTTGAAAACCTTAGCCAGCAT
CGGGATCACGCAAGATCTCGACGGTAAGTTGGTTATCAACGCCGATAAATTAAATACTGCACTCACCGATAAACCCAATA
GCGTCACTGCATTTTTTGTGGGTGATGGGGAAACCACGGGTTTTGCTACTCAGACTGAAAAGTTGCTCAATACCGCATTG
GATACGACATTAGGGACATTAAAAACAGCCACTGACGGTATTAATACTTCACTAAAAAACCTGGATAAACAAATTGCGGC
AACGACTGCCAGTATAGAAACAGCCATTGAGCGCTATAAAACACAATTTACTCAATTGGATAAGCTGATGACATCAATGA
ACAGTACAGCCAGTTTCTTAACACAACAATTTGATTCATAA

Upstream 100 bases:

>100_bases
CCCCTGCTATTCCAGCCATCATTATTCCTACTCTTTGTGTAAACTTTTCAGCTTTCTGACCGATAACAGAGTATCGACAC
TTGAATATTGAGGATTAGAC

Downstream 100 bases:

>100_bases
GGGATAAAACATGTATAAGCGATCTGGAAGTCAGGCTTACGCACAGGTAGGCCTGGAAAGTGGCGTAATGAGTGCCAGCC
CACACCAATTGATCGTGATG

Product: flagellar capping protein

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MASISALGTGSGLDLNTLLSQLSAAEQTRLTPLTTQQTSYKSKLTAYGVLQSALAKLETASTALKKADTLNSTAVSGSNS
AFSATTDSAASAGTYSIEVTNLAKAQSLLSADVPSATDKLGSSDATRTITITQPGQKEPMKISLTSEQTSLTGIRDAINK
QEGSVNASIMKADDNTYYLALTSKDTGTQSEMTISVAGDETLNNFLNYTPSSTGGSGALTQKVKAEDATLSVNGVSITRQ
SNTITDAPQGVTINLKAVTKEGAPEQLTIVRDNTATKAAIQSFVDAYNSLQTTFGSLTKYTVVETGQDQSTSNGALVGDG
TLRSIQTQLKSQLASSQSGDLKTLASIGITQDLDGKLVINADKLNTALTDKPNSVTAFFVGDGETTGFATQTEKLLNTAL
DTTLGTLKTATDGINTSLKNLDKQIAATTASIETAIERYKTQFTQLDKLMTSMNSTASFLTQQFDS

Sequences:

>Translated_466_residues
MASISALGTGSGLDLNTLLSQLSAAEQTRLTPLTTQQTSYKSKLTAYGVLQSALAKLETASTALKKADTLNSTAVSGSNS
AFSATTDSAASAGTYSIEVTNLAKAQSLLSADVPSATDKLGSSDATRTITITQPGQKEPMKISLTSEQTSLTGIRDAINK
QEGSVNASIMKADDNTYYLALTSKDTGTQSEMTISVAGDETLNNFLNYTPSSTGGSGALTQKVKAEDATLSVNGVSITRQ
SNTITDAPQGVTINLKAVTKEGAPEQLTIVRDNTATKAAIQSFVDAYNSLQTTFGSLTKYTVVETGQDQSTSNGALVGDG
TLRSIQTQLKSQLASSQSGDLKTLASIGITQDLDGKLVINADKLNTALTDKPNSVTAFFVGDGETTGFATQTEKLLNTAL
DTTLGTLKTATDGINTSLKNLDKQIAATTASIETAIERYKTQFTQLDKLMTSMNSTASFLTQQFDS
>Mature_465_residues
ASISALGTGSGLDLNTLLSQLSAAEQTRLTPLTTQQTSYKSKLTAYGVLQSALAKLETASTALKKADTLNSTAVSGSNSA
FSATTDSAASAGTYSIEVTNLAKAQSLLSADVPSATDKLGSSDATRTITITQPGQKEPMKISLTSEQTSLTGIRDAINKQ
EGSVNASIMKADDNTYYLALTSKDTGTQSEMTISVAGDETLNNFLNYTPSSTGGSGALTQKVKAEDATLSVNGVSITRQS
NTITDAPQGVTINLKAVTKEGAPEQLTIVRDNTATKAAIQSFVDAYNSLQTTFGSLTKYTVVETGQDQSTSNGALVGDGT
LRSIQTQLKSQLASSQSGDLKTLASIGITQDLDGKLVINADKLNTALTDKPNSVTAFFVGDGETTGFATQTEKLLNTALD
TTLGTLKTATDGINTSLKNLDKQIAATTASIETAIERYKTQFTQLDKLMTSMNSTASFLTQQFDS

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=469, Percent_Identity=48.8272921108742, Blast_Score=359, Evalue=1e-100,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 48627; Mature: 48496

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASISALGTGSGLDLNTLLSQLSAAEQTRLTPLTTQQTSYKSKLTAYGVLQSALAKLETA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
STALKKADTLNSTAVSGSNSAFSATTDSAASAGTYSIEVTNLAKAQSLLSADVPSATDKL
HHHHHHHHCCCCCEECCCCCCEECCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCHHHHC
GSSDATRTITITQPGQKEPMKISLTSEQTSLTGIRDAINKQEGSVNASIMKADDNTYYLA
CCCCCEEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEE
LTSKDTGTQSEMTISVAGDETLNNFLNYTPSSTGGSGALTQKVKAEDATLSVNGVSITRQ
EECCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCHHHEEECCCCEEEECCEEEEEC
SNTITDAPQGVTINLKAVTKEGAPEQLTIVRDNTATKAAIQSFVDAYNSLQTTFGSLTKY
CCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEE
TVVETGQDQSTSNGALVGDGTLRSIQTQLKSQLASSQSGDLKTLASIGITQDLDGKLVIN
EEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEE
ADKLNTALTDKPNSVTAFFVGDGETTGFATQTEKLLNTALDTTLGTLKTATDGINTSLKN
HHHCCHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LDKQIAATTASIETAIERYKTQFTQLDKLMTSMNSTASFLTQQFDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASISALGTGSGLDLNTLLSQLSAAEQTRLTPLTTQQTSYKSKLTAYGVLQSALAKLETA
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
STALKKADTLNSTAVSGSNSAFSATTDSAASAGTYSIEVTNLAKAQSLLSADVPSATDKL
HHHHHHHHCCCCCEECCCCCCEECCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCHHHHC
GSSDATRTITITQPGQKEPMKISLTSEQTSLTGIRDAINKQEGSVNASIMKADDNTYYLA
CCCCCEEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEE
LTSKDTGTQSEMTISVAGDETLNNFLNYTPSSTGGSGALTQKVKAEDATLSVNGVSITRQ
EECCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCHHHEEECCCCEEEECCEEEEEC
SNTITDAPQGVTINLKAVTKEGAPEQLTIVRDNTATKAAIQSFVDAYNSLQTTFGSLTKY
CCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEE
TVVETGQDQSTSNGALVGDGTLRSIQTQLKSQLASSQSGDLKTLASIGITQDLDGKLVIN
EEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEE
ADKLNTALTDKPNSVTAFFVGDGETTGFATQTEKLLNTALDTTLGTLKTATDGINTSLKN
HHHCCHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LDKQIAATTASIETAIERYKTQFTQLDKLMTSMNSTASFLTQQFDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8996114 [H]