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The map label for this gene is fliN [H]

Identifier: 218928943

GI number: 218928943

Start: 2068142

End: 2068558

Strand: Reverse

Name: fliN [H]

Synonym: YPO1822

Alternate gene names: 218928943

Gene position: 2068558-2068142 (Counterclockwise)

Preceding gene: 218928944

Following gene: 218928942

Centisome position: 44.45

GC content: 49.4

Gene sequence:

>417_bases
ATGAGTGACCCTAAGTTTCCGTCTGCTGATGGAAAGGAATCCGTGGACGATCTGTGGGCTTATGCGTTTAATGAGCAGCA
AGCAACAGAAAAACCCACGGCCACAACCGAAGGCGTCTTTAAATCGCTGGAAGCACCTGAGGGGCTGGGTAATTTGCAGG
ATATCGATTTAATTCTGGATATTCCGGTAAAACTCTCCGTTGAATTAGGTCGCACCAAAATGACCATCAAAGAGTTACTG
CGCCTGTCACAAGGCTCGGTGGTCTCCCTTGATGGTTTGGCAGGCGAACCCCTGGATATTTTGATTAACGGTTATCTGAT
TGCTCAGGGCGAAGTGGTGGTAGTGGCCGATAAATACGGGGTCCGCATCACGGACATCATTACGTCATCTGAACGTATGC
GCCGTTTGAGCCGCTAA

Upstream 100 bases:

>100_bases
TACTAACCAGTCAATACGGGACATTAAACGGGCAATATGCCCTGCGTGTTGAACATTTGATTAACCCTATTTTGAATGCT
CTGAGTGAGGAACAGCCCAA

Downstream 100 bases:

>100_bases
TGACTGCAGCTGCACCGACCTCGACAACATTGGCCTCAACAACGTTGGCCTCGACAACAACACAGCAAACCGCAACCACA
GGGTTTGCTGCCAGTCATCC

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSDPKFPSADGKESVDDLWAYAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELL
RLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSSERMRRLSR

Sequences:

>Translated_138_residues
MSDPKFPSADGKESVDDLWAYAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELL
RLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSSERMRRLSR
>Mature_137_residues
SDPKFPSADGKESVDDLWAYAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLR
LSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSSERMRRLSR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=138, Percent_Identity=72.463768115942, Blast_Score=194, Evalue=2e-51,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 15079; Mature: 14948

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPKFPSADGKESVDDLWAYAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILD
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEE
IPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYG
CCEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCC
VRITDIITSSERMRRLSR
EEEEEEECCHHHHHHHCC
>Mature Secondary Structure 
SDPKFPSADGKESVDDLWAYAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILD
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEE
IPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYG
CCEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCC
VRITDIITSSERMRRLSR
EEEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2656645; 11677609; 9324257 [H]