| Definition | Yersinia pestis CO92 chromosome, complete genome. |
|---|---|
| Accession | NC_003143 |
| Length | 4,653,728 |
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The map label for this gene is rafA [H]
Identifier: 218928719
GI number: 218928719
Start: 1803563
End: 1805689
Strand: Reverse
Name: rafA [H]
Synonym: YPO1581
Alternate gene names: 218928719
Gene position: 1805689-1803563 (Counterclockwise)
Preceding gene: 218928722
Following gene: 218928717
Centisome position: 38.8
GC content: 50.73
Gene sequence:
>2127_bases ATGAATACTACCTTTGTCAGATTATCCAGCCGTTCTTCTGACATGATCGTGCGCTGCTCTCCCTACGCAGAAATTGTTTA CTGGGGTAAGCCTCTGCTTGATTACTCGCCTGCGATGATGGAAGCCTTAAACCGCCCGGTCGCTAACAGCCGCCTGGACA GCGATATACCGTTGACGCTCTGCCCTGAAAATGGCCGAGGGCTGTTCAGCGTGCCCGGTATGGAGGGAAACCGTGATGGC GAAGATTGGTCTCCCATTTTCACCAGCCAGAGCCATACACTTGAAAACAATTTATTAACGATTATTAGCGAAGATACGAG CGCGGGCTTGCGGCTGGTGAGTGAGTTGCAGATGTGCCCAGACAGTGGCGTGATAAAAACCCGCAATACGCTGACCAATA TTAAAGCCGGATGCTACCGAATCGATCGGTTGGCCGTGACCTTGCCTTTTCCGGAACGTGCCAATGAAATCATGGCCTTC AATGGCCGTTGGATTAAAGAGTTCCAGCGCCACTCACTTAAACTCGATCATGGCGGTTATATTCAGGAAAATCGGCGCGG CAGAACCTCACATGAATATTTTCCCGGCATGGTAGTAGGGAAAGCAGGCTTCAGTGAGCAACAGGGCGAGGTCTGGGGCT TGCATCTGGCCTGGAGTGGAAACCATCGTTTACGCGCTGACTGTAAAAGTGATGGCCGCCGTCAGGTGCAGGCCGAAGCC CTCTATTTTTCCGGTGAAATCGTTCTGGAACACTTGCAAAGTGTCAGTACCCCGTGGGTCTACGCGACCTATTCCGCTAC CGGGTTGAACGGTATGAGCCACAGTTTTCATCACTATGTGCGCCAGAATATCGTGCCATCACTGGCAGAAAAACCGCGCC CGGTGCACCTCAATACTTGGGAAGGCATCTATTTTAAGCATGACCCAGACTACATTATTCAGATGGTGAAAAACGCGGCC AAAATTGGTGTGGAGCGCTTTATCATTGATGATGGCTGGTTCAAAGGACGCAACAACGATTTAAGTTCACTGGGCGATTG GTATATTGATGCCGAAAAATACCCACAGGGGCTGAACCCCATTATTGAAGCAGTGAATGAATACGGTATGGAGTTTGGTA TCTGGGTGGAGCCTGAAATGATCAATCAGGATTCTGATTTATACCGTAATCATCCTGACTGGGTGCTGAAACTTGACGGC TACCCGCTACTGAAAGGACGCGACCAACTGTTGCTCGATTTGTCGAACCCGGCCGTTTTCGACTACCTGCTAGAACGCTT GAGCTGGTTGTTGGGCGAACACAAAGTTGACTATGTTAAATGGGATTTCAACCGCGAGATGGTCCAGCCCGGTCACCGCG GCCACCCTTCGTTGGTACAACAGACCGAGCAACTGTATCGCTTATTCGACCAACTCAACCTGCATTTCCCACATATTGAA TTTGAATCCTGCGCGTCAGGCGGGGGGCGTATTGATTATGAAATTCTGCAACGCTGCCACCGTTTCTGGCCATCAGACAG CAACGACGCTCTTGATCGCCAGCAAATTCAGCGAGGGATGAGCTACTTCTTCCCTCCAGAAGTTATGGGCGCGCATATTG GCGGTACTCCGTGCCATACCACCGCCAGAATGCACTCTATTAATTTTCGGGGGCTGACAGCGCTGTTCGGCCATATGGGG GTCGAGCTTGATCCGGTGAGTGAATCTCCTGCCGAGCAACAGGCTTTTGCCCGTTATATTGCGCTACATAAACAACTGCG GCCGCTGTTACATAGCGGAAACACGATCCGGCTCGACCATCCGGATAAAACAACATTAATTAATGCCGTTATCGCACACG ACCAGCAGCAAGCTGTCGTCCTGATCAGCCAGCTAGCACTACCGGAATATGCCTTATGTGGCAACGTATTGATTCCTGGT CTTAACCCATCCACACACTATCAGATCGAGGTTCTGGACATGCCTGACAGCATGCACAAACCACGAAATAACACCATGAA GCGCTATCCAGCCTGGTTGAAAAGCCCGCTCATCGTCAGTGGCGATTGGCTAGAGAAAGCAGGAATTGCCCTTCCCATCC TCAATCCTGAATCGGCTATCCTGATACAGCTTTCAGCCGTAAATTAA
Upstream 100 bases:
>100_bases CAGTTTCTCAGCCACAATCTTAAAAAATTCAATACAGATAACGAGGGTGTCGCCGCCATGCCATCACCTCGAGCAAATTT TCGTTTTCACAGGAGCCATT
Downstream 100 bases:
>100_bases CCTCAGGCCGCCGTTTATGGCGGCCTACTTTGCGTCCAATGGGCTATTTGGTCTTCACGTTGTTGAGCAAGACCGCACTT ATCTATTTGGGTTATACCCA
Product: alpha-galactosidase
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 708; Mature: 708
Protein sequence:
>708_residues MNTTFVRLSSRSSDMIVRCSPYAEIVYWGKPLLDYSPAMMEALNRPVANSRLDSDIPLTLCPENGRGLFSVPGMEGNRDG EDWSPIFTSQSHTLENNLLTIISEDTSAGLRLVSELQMCPDSGVIKTRNTLTNIKAGCYRIDRLAVTLPFPERANEIMAF NGRWIKEFQRHSLKLDHGGYIQENRRGRTSHEYFPGMVVGKAGFSEQQGEVWGLHLAWSGNHRLRADCKSDGRRQVQAEA LYFSGEIVLEHLQSVSTPWVYATYSATGLNGMSHSFHHYVRQNIVPSLAEKPRPVHLNTWEGIYFKHDPDYIIQMVKNAA KIGVERFIIDDGWFKGRNNDLSSLGDWYIDAEKYPQGLNPIIEAVNEYGMEFGIWVEPEMINQDSDLYRNHPDWVLKLDG YPLLKGRDQLLLDLSNPAVFDYLLERLSWLLGEHKVDYVKWDFNREMVQPGHRGHPSLVQQTEQLYRLFDQLNLHFPHIE FESCASGGGRIDYEILQRCHRFWPSDSNDALDRQQIQRGMSYFFPPEVMGAHIGGTPCHTTARMHSINFRGLTALFGHMG VELDPVSESPAEQQAFARYIALHKQLRPLLHSGNTIRLDHPDKTTLINAVIAHDQQQAVVLISQLALPEYALCGNVLIPG LNPSTHYQIEVLDMPDSMHKPRNNTMKRYPAWLKSPLIVSGDWLEKAGIALPILNPESAILIQLSAVN
Sequences:
>Translated_708_residues MNTTFVRLSSRSSDMIVRCSPYAEIVYWGKPLLDYSPAMMEALNRPVANSRLDSDIPLTLCPENGRGLFSVPGMEGNRDG EDWSPIFTSQSHTLENNLLTIISEDTSAGLRLVSELQMCPDSGVIKTRNTLTNIKAGCYRIDRLAVTLPFPERANEIMAF NGRWIKEFQRHSLKLDHGGYIQENRRGRTSHEYFPGMVVGKAGFSEQQGEVWGLHLAWSGNHRLRADCKSDGRRQVQAEA LYFSGEIVLEHLQSVSTPWVYATYSATGLNGMSHSFHHYVRQNIVPSLAEKPRPVHLNTWEGIYFKHDPDYIIQMVKNAA KIGVERFIIDDGWFKGRNNDLSSLGDWYIDAEKYPQGLNPIIEAVNEYGMEFGIWVEPEMINQDSDLYRNHPDWVLKLDG YPLLKGRDQLLLDLSNPAVFDYLLERLSWLLGEHKVDYVKWDFNREMVQPGHRGHPSLVQQTEQLYRLFDQLNLHFPHIE FESCASGGGRIDYEILQRCHRFWPSDSNDALDRQQIQRGMSYFFPPEVMGAHIGGTPCHTTARMHSINFRGLTALFGHMG VELDPVSESPAEQQAFARYIALHKQLRPLLHSGNTIRLDHPDKTTLINAVIAHDQQQAVVLISQLALPEYALCGNVLIPG LNPSTHYQIEVLDMPDSMHKPRNNTMKRYPAWLKSPLIVSGDWLEKAGIALPILNPESAILIQLSAVN >Mature_708_residues MNTTFVRLSSRSSDMIVRCSPYAEIVYWGKPLLDYSPAMMEALNRPVANSRLDSDIPLTLCPENGRGLFSVPGMEGNRDG EDWSPIFTSQSHTLENNLLTIISEDTSAGLRLVSELQMCPDSGVIKTRNTLTNIKAGCYRIDRLAVTLPFPERANEIMAF NGRWIKEFQRHSLKLDHGGYIQENRRGRTSHEYFPGMVVGKAGFSEQQGEVWGLHLAWSGNHRLRADCKSDGRRQVQAEA LYFSGEIVLEHLQSVSTPWVYATYSATGLNGMSHSFHHYVRQNIVPSLAEKPRPVHLNTWEGIYFKHDPDYIIQMVKNAA KIGVERFIIDDGWFKGRNNDLSSLGDWYIDAEKYPQGLNPIIEAVNEYGMEFGIWVEPEMINQDSDLYRNHPDWVLKLDG YPLLKGRDQLLLDLSNPAVFDYLLERLSWLLGEHKVDYVKWDFNREMVQPGHRGHPSLVQQTEQLYRLFDQLNLHFPHIE FESCASGGGRIDYEILQRCHRFWPSDSNDALDRQQIQRGMSYFFPPEVMGAHIGGTPCHTTARMHSINFRGLTALFGHMG VELDPVSESPAEQQAFARYIALHKQLRPLLHSGNTIRLDHPDKTTLINAVIAHDQQQAVVLISQLALPEYALCGNVLIPG LNPSTHYQIEVLDMPDSMHKPRNNTMKRYPAWLKSPLIVSGDWLEKAGIALPILNPESAILIQLSAVN
Specific function: Unknown
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 80450; Mature: 80450
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTTFVRLSSRSSDMIVRCSPYAEIVYWGKPLLDYSPAMMEALNRPVANSRLDSDIPLTL CCCEEEEEECCCCCEEEEECCCEEEEECCCCHHCCCHHHHHHHCCCCCCCCCCCCCCEEE CPENGRGLFSVPGMEGNRDGEDWSPIFTSQSHTLENNLLTIISEDTSAGLRLVSELQMCP CCCCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCC DSGVIKTRNTLTNIKAGCYRIDRLAVTLPFPERANEIMAFNGRWIKEFQRHSLKLDHGGY CCCEEEECHHHHHHHHHHEEEEEEEEEECCCHHCCCEEEECCHHHHHHHHCCEEECCCCC IQENRRGRTSHEYFPGMVVGKAGFSEQQGEVWGLHLAWSGNHRLRADCKSDGRRQVQAEA CCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCHHEEEEEE LYFSGEIVLEHLQSVSTPWVYATYSATGLNGMSHSFHHYVRQNIVPSLAEKPRPVHLNTW EEECHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHCCCCCEEEECC EGIYFKHDPDYIIQMVKNAAKIGVERFIIDDGWFKGRNNDLSSLGDWYIDAEKYPQGLNP CCEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHCCEEEEHHHCCCCCHH IIEAVNEYGMEFGIWVEPEMINQDSDLYRNHPDWVLKLDGYPLLKGRDQLLLDLSNPAVF HHHHHHHCCCEEEEEECHHHCCCCCHHHCCCCCEEEEECCEEEECCCCEEEEECCCCHHH DYLLERLSWLLGEHKVDYVKWDFNREMVQPGHRGHPSLVQQTEQLYRLFDQLNLHFPHIE HHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC FESCASGGGRIDYEILQRCHRFWPSDSNDALDRQQIQRGMSYFFPPEVMGAHIGGTPCHT HHHHCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCC TARMHSINFRGLTALFGHMGVELDPVSESPAEQQAFARYIALHKQLRPLLHSGNTIRLDH HHHEEECCCCHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC PDKTTLINAVIAHDQQQAVVLISQLALPEYALCGNVLIPGLNPSTHYQIEVLDMPDSMHK CCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCEEECCCCCCCEEEEEEEECCHHHCC PRNNTMKRYPAWLKSPLIVSGDWLEKAGIALPILNPESAILIQLSAVN CCCCCHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCEEEEEEEECC >Mature Secondary Structure MNTTFVRLSSRSSDMIVRCSPYAEIVYWGKPLLDYSPAMMEALNRPVANSRLDSDIPLTL CCCEEEEEECCCCCEEEEECCCEEEEECCCCHHCCCHHHHHHHCCCCCCCCCCCCCCEEE CPENGRGLFSVPGMEGNRDGEDWSPIFTSQSHTLENNLLTIISEDTSAGLRLVSELQMCP CCCCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCC DSGVIKTRNTLTNIKAGCYRIDRLAVTLPFPERANEIMAFNGRWIKEFQRHSLKLDHGGY CCCEEEECHHHHHHHHHHEEEEEEEEEECCCHHCCCEEEECCHHHHHHHHCCEEECCCCC IQENRRGRTSHEYFPGMVVGKAGFSEQQGEVWGLHLAWSGNHRLRADCKSDGRRQVQAEA CCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCHHEEEEEE LYFSGEIVLEHLQSVSTPWVYATYSATGLNGMSHSFHHYVRQNIVPSLAEKPRPVHLNTW EEECHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHCCCCCEEEECC EGIYFKHDPDYIIQMVKNAAKIGVERFIIDDGWFKGRNNDLSSLGDWYIDAEKYPQGLNP CCEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHCCEEEEHHHCCCCCHH IIEAVNEYGMEFGIWVEPEMINQDSDLYRNHPDWVLKLDGYPLLKGRDQLLLDLSNPAVF HHHHHHHCCCEEEEEECHHHCCCCCHHHCCCCCEEEEECCEEEECCCCEEEEECCCCHHH DYLLERLSWLLGEHKVDYVKWDFNREMVQPGHRGHPSLVQQTEQLYRLFDQLNLHFPHIE HHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC FESCASGGGRIDYEILQRCHRFWPSDSNDALDRQQIQRGMSYFFPPEVMGAHIGGTPCHT HHHHCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCC TARMHSINFRGLTALFGHMGVELDPVSESPAEQQAFARYIALHKQLRPLLHSGNTIRLDH HHHEEECCCCHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC PDKTTLINAVIAHDQQQAVVLISQLALPEYALCGNVLIPGLNPSTHYQIEVLDMPDSMHK CCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCEEECCCCCCCEEEEEEEECCHHHCC PRNNTMKRYPAWLKSPLIVSGDWLEKAGIALPILNPESAILIQLSAVN CCCCCHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2556373; 2180920; 786627 [H]