| Definition | Yersinia pestis CO92 chromosome, complete genome. |
|---|---|
| Accession | NC_003143 |
| Length | 4,653,728 |
Click here to switch to the map view.
The map label for this gene is 218928594
Identifier: 218928594
GI number: 218928594
Start: 1643068
End: 1645485
Strand: Reverse
Name: 218928594
Synonym: YPO1451
Alternate gene names: NA
Gene position: 1645485-1643068 (Counterclockwise)
Preceding gene: 218928595
Following gene: 218928593
Centisome position: 35.36
GC content: 49.88
Gene sequence:
>2418_bases ATGACGACCACCCTTGATATTATCAATAGCGCTAAAGACCTAGATCCTGCTGAGTATCGCGCGTTTTTTCTTCAAAGCAA AGCACCCCTGTTTTACGATCTGCGATTTCTTATCGCGGCTGAGCAGTCACCCTTGTTAAACGTCAGTAAAATTTTCTATT TGCTTGCGCGAGACGAAGGGAGGCTGATTGCGCTGGTTCCGCTTTATCTTCAAGAATTTCGGTCCGCTGACCCGTTAGGG TTATTGATTTCCTCCGCTAAGCTCTCGATAGAATCTGAAGAGCGCGGACTGTTTAGCCATATTATACATTGTACGGATAC CACGATACCGACGTTAAGTCACGACCCAAGTCTTTACGCACGAATATTCGATGCTATTACGGCTATCGCACAGGCTGAGC TGGCGCGTTATTTCTGTTTTCTCAATGTACAGGATGGGGTGCTCTTGCGTGAGGCTCAACGTAATGGGCTAAATATAAAC TACATGGTGGATAAATTTTCAATCGAACTGGATGCTTTTCCGGATTTTGACAGTTTTGCGCAGGCTTTGCCCAAGTACAG GCGTTACGAAATGGTACGCCAGCTTCGTATCTTTAACCGCAGCGATGCGAAAGTTCGAATACTTGCTCCTCCCTTTGATA ATGAAATTGAGAAACTGGCCCGGTTGTATTATTTGACCACCCAACGGCTGGGGACGCCCTATTATTGGCCAGAATCACAA TTGGCTGTTTTTTGCCGTCTTTGCGGCGATCTGGTTCGTCTTATCGTCGTAGAACAGAACGGGCAGATTGTCAGCGGCTT TATCTGCTTCGAGGAAGACGGCGCTCTCCATTTCTGGTCGGCCGGCATGGATGATGAGAGTTCCGATTTCAGCCCTTACA CCTTGGGCGTGTCTGCCGTGTATCGCTATGCATTCGAAAAAGGAATTAATCTTATCGAGTGCGGCCGCTTGAATTCCCAC ATCAAGACTCGCTTGGGGTTCAAACCCAAACGACTCTATTCCATTGTCAGCCAGGATCTGGGGATCCCCGCCGCTACGCA GACTTCTCTGTCTCAACTGAAGCTGGCATCGCAACTGGATGGCGAGGTTCGTCTTGCTTCGCATCCCGCCTTTGATGAGT GGTATCTCACCAGTGTCTGGAACGGTCGAGGCCCAACACGTAGACCTGCTGGAATAGTACGCGCCGCGACTGAGGCAGAT GTGATCCGCACGATTGTCTTTGCCAAGGAGCGAGGCATGGAAGTGAGCGTTCGTGGAAGTGGGCACAACTACGTCGGTTG TTTTCTTCGCGTTGATACGCTGATGTTGGACATTTCCGGCTTGAAGGGACTTGATATTGATAGCCGGCACAAGCGTGCCA TCGTTGAATCTGGGGTCAGTAGTGGTCAATTGTGTCATGCACTGGCGGCTAAAGGTTTGGCTTTTCCGACAGGACATGTA AAAGAAGTGGGTATCAGCGGATTCCTGTTGGGGGGAGGGCTCGGGATCAACTGTAGTCAATGGGGAGGGATGAGTGTGTT CAACGTACAAGCCTTGGACATTGTCACCGCAGACGGTCATCTACGCCATGTTTCCGAAACCCAGGAGCCAGACTTGTTCT GGGCCGCTCGTGGCGCTGGACCCTGTTCGTTTTTTGTTGTGACCCGTTTTTACCTCAGTTGCTACTCACTGCCTCGGGTA ATAACCAACAGCTTATATACGCTACCTTTCACGTATTTACACGATTTATTGGCGAGACTTGAAGACGCATCTCCCCCTAC AAATCTTCAGGTGATGGTGTCTGTCAGCCCCCCGACATCGGGTGACACACCAGCAGTACTGTTAAATATTTTGGCGTTTA CCGATAGCCCGCAAGAGGCGCAAGCGCTATGTGAATCTTTTGAAACCCGCCTAGAGCTGCCACTTACAGCCTTGGCCATC AATCAGCCCTCAAACTTCGAGACCATTTATGAGCAGTTCAGCAGCATGGTGGTATCAAAAAGGTTTTATGCCGACAATAT CCTTACAGATAACACACAGGAATTGGTTTCCATCCTATCCCGATATTTATCAGACGCGCCGTCTCGGGGTGCCCTTACAA CGATTTTCTGGCGGGGTGTGACCACCTATCCGCAAGCAGCATTTTCGGCACACGGCAAGTTTTTTGTATCGACCTACGCC CAGTGGGACGATGCAAAAGATGACAGTGTCAATAAATATTGGTTAAAACGGATGTATGACGAGCTTCAGGAAATTGCCCG TAGTCGTTATATCAACGAGTATGATCTTGAGACAAGGGCGGGCGAGACCAGCAAGTGCTTCGCCGCTGAGAACTGGGAGA GGCTGCAAAGGCTCCGGCTTGAATACGACCCTGACGGCGTATTTGTTGACGTGCAGCAGTTGGAGGAGCATGGCGATCAG CCAGGAGCGAACAACTAA
Upstream 100 bases:
>100_bases TCGCATTAAGATGCAGAAAGGTAACATGCTGTTTTTCTTAATGTTACCTATTGCCACTCAGTCAAATTGTCTGCCAATCC GATAAACTATGGAGGCTTTA
Downstream 100 bases:
>100_bases ATGGAATCTCAGCGCCTTATCTCCCCGCCCTGAAGGACGGGGTTTTACGGCGAACTTGATAATTGCTTGTTAGATATTTT TTCATTTCCCCCTGCCAGGT
Product: putative oxidoreductase
Products: NA
Alternate protein names: 6-HDNO [H]
Number of amino acids: Translated: 805; Mature: 804
Protein sequence:
>805_residues MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLG LLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNIN YMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQ LAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSH IKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEAD VIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHV KEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRV ITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAI NQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYA QWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQ PGANN
Sequences:
>Translated_805_residues MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLG LLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNIN YMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQ LAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSH IKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEAD VIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHV KEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRV ITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAI NQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYA QWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQ PGANN >Mature_804_residues TTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLGL LISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINY MVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQL AVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSHI KTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADV IRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHVK EVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRVI TNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAIN QPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYAQ WDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQP GANN
Specific function: Unknown
COG id: COG0277
COG function: function code C; FAD/FMN-containing dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding PCMH-type domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012951 - InterPro: IPR016166 - InterPro: IPR016167 - InterPro: IPR016168 - InterPro: IPR006094 - InterPro: IPR006093 [H]
Pfam domain/function: PF08031 BBE; PF01565 FAD_binding_4 [H]
EC number: =1.5.3.6 [H]
Molecular weight: Translated: 90304; Mature: 90173
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS01159 WW_DOMAIN_1 ; PS00862 OX2_COVAL_FAD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEG CCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHEEEEEEEEECCCCCCCHHHEEEEEECCCC RLIALVPLYLQEFRSADPLGLLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYA CEEEEHHHHHHHHCCCCCCEEEEECCEEEECCHHCHHHHHHHHHCCCCCCCCCCCHHHHH RIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFA HHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHCCCCEEEEEEEEEEEEEECCCCHHHHH QALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQ HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH LAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAV HHHHHHHHHHHHEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEHHHHHH YRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLD HHHHHHHCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC GEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGS CCEEEECCCCCCCEEEEEEECCCCCCCCCCHHHEEHHHHHHHHHHHHHHHCCCEEEEECC GHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHV CCCEEEEEEEEEEHEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCH KEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAG HHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCCEEEEECCCC PCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTS CHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC GDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSK CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH RFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYA HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCEEEEEHH QWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC EYDPDGVFVDVQQLEEHGDQPGANN EECCCCEEEEHHHHHHCCCCCCCCC >Mature Secondary Structure TTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEG CCHHHHHHCCCCCCHHHHHHHHHCCCCCHHEEEEEEEEECCCCCCCHHHEEEEEECCCC RLIALVPLYLQEFRSADPLGLLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYA CEEEEHHHHHHHHCCCCCCEEEEECCEEEECCHHCHHHHHHHHHCCCCCCCCCCCHHHHH RIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFA HHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHCCCCEEEEEEEEEEEEEECCCCHHHHH QALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQ HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH LAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAV HHHHHHHHHHHHEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEHHHHHH YRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLD HHHHHHHCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC GEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGS CCEEEECCCCCCCEEEEEEECCCCCCCCCCHHHEEHHHHHHHHHHHHHHHCCCEEEEECC GHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHV CCCEEEEEEEEEEHEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCH KEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAG HHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCCEEEEECCCC PCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTS CHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC GDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSK CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH RFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYA HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCEEEEEHH QWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC EYDPDGVFVDVQQLEEHGDQPGANN EECCCCEEEEHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3622516; 2680607; 2115879 [H]